C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly-U binding splicing factor 60KDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179950 PUF60 9606 - 8:143816344-143829859 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313352 PUF60-004 143816377-143829039 protein_coding
  ENST00000349157 PUF60-002 143816377-143829352 protein_coding
  ENST00000453551 PUF60-003 143816377-143829026 protein_coding
  ENST00000456095 PUF60-005 143816377-143829303 protein_coding
  ENST00000524570 PUF60-010 143817042-143823282 processed_transcript
  ENST00000526151 PUF60-016 143821349-143829315 retained_intron
  ENST00000526459 PUF60-024 143817578-143829338 protein_coding
  ENST00000526683 PUF60-001 143816344-143829859 protein_coding
  ENST00000527197 PUF60-006 143816520-143829320 protein_coding
  ENST00000527584 PUF60-019 143818373-143824460 retained_intron
  ENST00000527744 PUF60-025 143817586-143829299 protein_coding
  ENST00000528320 PUF60-018 143817886-143824399 retained_intron
  ENST00000528999 PUF60-021 143817979-143819037 processed_transcript
  ENST00000529693 PUF60-022 143818193-143818963 retained_intron
  ENST00000529999 PUF60-012 143817950-143829044 protein_coding
  ENST00000531897 PUF60-013 143817996-143829304 protein_coding
  ENST00000531951 PUF60-014 143817866-143829028 processed_transcript
  ENST00000531995 PUF60-020 143820233-143821743 retained_intron
  ENST00000532127 PUF60-015 143820426-143829319 retained_intron
  ENST00000532884 PUF60-023 143817080-143818476 protein_coding
  ENST00000533162 PUF60-011 143818222-143829338 protein_coding
  ENST00000533362 PUF60-017 143821597-143825140 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313352ENST00000349157ENST00000453551ENST00000456095ENST00000526459ENST00000526683ENST00000527197ENST00000527584ENST00000527744ENST00000531951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313352 N/A N/A 0.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.982±0.00 N/A
ENST00000349157 24.113±0.00 28.093±0.00 N/A 17.248±10.96 12.415±11.04 16.790±15.71 3.927±2.21 15.997±14.83 7.097±4.00 15.067±12.26 14.758±0.00 24.492±15.56 29.063±21.38 40.426±0.00
ENST00000453551 N/A N/A N/A 3.236±0.00 N/A 1.998±0.00 N/A 3.116±0.00 2.649±0.00 N/A N/A 13.345±0.00 N/A N/A
ENST00000456095 20.489±0.00 32.888±0.00 N/A 18.164±15.22 22.708±0.00 9.331±0.00 17.938±0.00 24.742±0.00 16.479±0.00 7.043±5.94 20.404±0.00 17.753±2.65 22.175±16.42 24.492±10.70
ENST00000526459 N/A N/A N/A N/A N/A 2.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526683 N/A N/A N/A N/A N/A N/A N/A 6.818±0.00 N/A 0.980±0.00 N/A N/A N/A N/A
ENST00000527197 N/A N/A 1.056±0.00 N/A 2.927±0.00 N/A 3.963±3.02 1.433±0.00 11.774±0.00 12.434±0.00 10.462±3.12 11.577±0.00 N/A 22.284±0.00
ENST00000527584 N/A N/A 1.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527744 N/A N/A N/A N/A 4.512±0.00 N/A N/A 2.704±0.00 N/A N/A N/A N/A N/A N/A
ENST00000531951 N/A N/A N/A N/A 2.307±0.00 N/A 0.807±0.00 N/A N/A 2.188±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0002GT CIL_0002GT_0001 CGP 8:143790920-143829859
CIL_0006FY CIL_0006FY_0002 CGP 8:143816344-143840974

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001241 puf60b poly-U binding splicing factor b protein_coding Danio_rerio
ENSDARG00000032175 puf60a poly-U binding splicing factor a protein_coding Danio_rerio
ENSMUSG00000002524 Puf60 poly-U binding splicing factor 60 protein_coding Mus_musculus

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