C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527449 RBM25-009 ENSG00000119707 9606 + 14:73107302-73121313 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000527449
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000527449 1.581±0.00 1.821±0.00 4.140±0.00 3.058±0.64 1.379±0.00 2.339±0.00 1.869±0.60 4.937±0.00 3.002±0.00 2.177±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0001 VISTA 14:72878760-73482269
CIL_0001TO CIL_0001TO_0001 CGP 14:72969451-73123898
CIL_0003OW CIL_0003OW_0001 CGP 14:73058436-73223691

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048155 Rbm25-002 protein_coding Mus_musculus 0 1339
ENSMUST00000182450 Rbm25-020 nonsense_mediated_decay Mus_musculus 0 1212
ENSMUST00000183181 Rbm25-016 retained_intron Mus_musculus 0 750
ENSMUST00000182840 Rbm25-015 processed_transcript Mus_musculus 0 442
ENSMUST00000181983 Rbm25-003 protein_coding Mus_musculus 0 425

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