C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527972 SMTNL1-001 ENSG00000214872 9606 + 11:57542641-57550274 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastMuscleOvaryTestisENST00000527972
Transcript ID Adipose Breast Muscle Ovary Testis
ENST00000527972 0.060±0.00 6.478±0.00 87.118±0.00 0.177±0.06 1.047±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008157 IEA protein phosphatase 1 binding
GO:0014823 IEA response to activity
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0031430 IEA M band
GO:0031674 IEA I band
GO:0042493 IEA response to drug
GO:0043292 IEA contractile fiber
GO:0045907 IEA positive regulation of vasoconstriction
GO:0045908 IEA negative regulation of vasodilation
GO:0048644 IEA muscle organ morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028471 Smtnl1-001 protein_coding Mus_musculus 0 732
ENSMUST00000170588 Smtn-201 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000144635 Smtn-005 processed_transcript Mus_musculus 6.00036e-42 176
ENSMUST00000020721 Smtn-001 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000154861 Smtn-004 processed_transcript Mus_musculus 6.00036e-42 176
ENSMUST00000020718 Smtn-002 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000075118 Smtn-003 protein_coding Mus_musculus 1e-28 132
ENSMUST00000110011 Smtn-009 protein_coding Mus_musculus 1e-28 132

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