C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BCL2-associated transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000531224 BCLAF1-003 ENSG00000029363 9606 - 6:136256863-136289851 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLungOvaryPlacentaENST00000531224
Transcript ID Adipose Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000531224 1.052±0.00 4.105±0.42 2.081±0.00 0.887±0.00 1.418±0.00 3.984±0.00 5.427±0.00 0.780±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000879 CIL_000879_0001 VISTA 6:135802414-136405223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 TAS apoptotic process
GO:0043065 IDA positive regulation of apoptotic process
GO:0043620 IMP regulation of DNA-templated transcription in response to stress
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:2000144 IMP positive regulation of DNA-templated transcription, initiation
GO:2001022 IMP positive regulation of response to DNA damage stimulus
GO:2001244 IMP positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043881 Bclaf1-002 protein_coding Mus_musculus 0 4486
ENSMUST00000185800 Bclaf1-008 protein_coding Mus_musculus 0 4198
ENSMUST00000092678 Bclaf1-201 protein_coding Mus_musculus 0 3461
ENSMUST00000186100 Bclaf1-001 nonsense_mediated_decay Mus_musculus 0 3262
ENSMUST00000190156 Bclaf1-009 nonsense_mediated_decay Mus_musculus 0 3173
ENSMUST00000191438 Bclaf1-005 nonsense_mediated_decay Mus_musculus 0 1984
ENSMUST00000188546 Bclaf1-004 retained_intron Mus_musculus 0 972
ENSMUST00000120619 Gm15719-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000187338 Bclaf1-006 retained_intron Mus_musculus 0 309

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