C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533907 RRP8-002 ENSG00000132275 9606 - 11:6599943-6603604 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000533907
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000533907 1.423±0.00 1.799±1.06 1.272±0.00 0.500±0.00 1.925±0.00 0.983±0.48 0.803±0.00 3.141±0.48 3.337±2.14 1.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I3 CIL_0001I3_0001 CGP 11:6497260-6603620
CIL_0001HZ CIL_0001HZ_0001 CGP 11:6595075-6610874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033179 Rrp8-001 protein_coding Mus_musculus 0 590
ENSMUST00000098148 Rrp8-002 protein_coding Mus_musculus 0 580
ENSMUST00000154852 Rrp8-005 retained_intron Mus_musculus 0 440
ENSMUST00000127738 Rrp8-004 processed_transcript Mus_musculus 0 422
ENSMUST00000148176 Rrp8-006 retained_intron Mus_musculus 4e-34 150

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