C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BCL2-associated transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534269 BCLAF1-007 ENSG00000029363 9606 - 6:136259696-136289795 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000534269
Transcript ID Breast
ENST00000534269 2.934±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000879 CIL_000879_0001 VISTA 6:135802414-136405223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006915 IEA apoptotic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:2001022 IEA positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190156 Bclaf1-009 nonsense_mediated_decay Mus_musculus 0 1592
ENSMUST00000185800 Bclaf1-008 protein_coding Mus_musculus 0 1583
ENSMUST00000092678 Bclaf1-201 protein_coding Mus_musculus 0 1574
ENSMUST00000043881 Bclaf1-002 protein_coding Mus_musculus 0 1574
ENSMUST00000186100 Bclaf1-001 nonsense_mediated_decay Mus_musculus 0 1574
ENSMUST00000188546 Bclaf1-004 retained_intron Mus_musculus 0 970
ENSMUST00000189158 Bclaf1-007 nonsense_mediated_decay Mus_musculus 0 905
ENSMUST00000120619 Gm15719-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000191438 Bclaf1-005 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000187338 Bclaf1-006 retained_intron Mus_musculus 0 313
ENSMUST00000191143 Bclaf1-003 retained_intron Mus_musculus 0 303

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