C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534343 RRP8-003 ENSG00000132275 9606 - 11:6599920-6603579 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000534343
Transcript ID Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000534343 5.607±0.00 3.239±0.00 3.924±0.00 5.171±0.00 4.347±0.00 3.533±0.00 3.565±0.00 6.397±0.00 5.017±0.06 3.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I3 CIL_0001I3_0001 CGP 11:6497260-6603620
CIL_0001HZ CIL_0001HZ_0001 CGP 11:6595075-6610874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098148 Rrp8-002 protein_coding Mus_musculus 0 435
ENSMUST00000033179 Rrp8-001 protein_coding Mus_musculus 0 435
ENSMUST00000127738 Rrp8-004 processed_transcript Mus_musculus 0 379
ENSMUST00000154852 Rrp8-005 retained_intron Mus_musculus 0 379
ENSMUST00000148176 Rrp8-006 retained_intron Mus_musculus 6e-34 148

Loading