C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538771 PAFAH1B3-201 ENSG00000079462 9606 - 19:42297033-42302777 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungOvaryPlacentaTestisENST00000538771
Transcript ID Adrenal Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000538771 10.003±0.00 0.854±0.00 0.907±0.07 3.228±0.00 0.258±0.00 2.835±0.00 8.283±4.73 4.543±2.67 13.448±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V7 CIL_0005V7_0001 CGP 19:42268537-42303546
CIL_0005V8 CIL_0005V8_0001 CGP 19:42297033-42310821

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003847 IEA 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006629 TAS lipid metabolic process
GO:0007283 IEA spermatogenesis
GO:0007399 TAS nervous system development
GO:0007420 IEA brain development
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016042 IEA lipid catabolic process
GO:0016787 IEA hydrolase activity
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005583 Pafah1b3-001 protein_coding Mus_musculus 0 856
ENSMUST00000108410 Pafah1b3-007 protein_coding Mus_musculus 0 760
ENSMUST00000140093 Pafah1b3-008 retained_intron Mus_musculus 0 651
ENSMUST00000148150 Pafah1b3-005 protein_coding Mus_musculus 0 553
ENSMUST00000155118 Pafah1b3-002 protein_coding Mus_musculus 0 527

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