C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539208 GNE-002 ENSG00000159921 9606 - 9:36217152-36258445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartMuscleENST00000539208
Transcript ID Adipose Adrenal Breast Heart Muscle
ENST00000539208 3.144±0.00 2.723±0.00 2.481±0.00 1.190±0.00 1.458±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0001 CGP 9:36169394-36304781
CIL_0006K3 CIL_0006K3_0001 CGP 9:36190856-36304781
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004553 IEA hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005524 IEA ATP binding
GO:0005737 TAS cytoplasm
GO:0006045 IEA N-acetylglucosamine biosynthetic process
GO:0006047 IEA UDP-N-acetylglucosamine metabolic process
GO:0006054 TAS N-acetylneuraminate metabolic process
GO:0007155 TAS cell adhesion
GO:0009384 IEA N-acylmannosamine kinase activity
GO:0046835 IEA carbohydrate phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102936 Gne-002 protein_coding Mus_musculus 0 1672
ENSMUST00000030201 Gne-001 protein_coding Mus_musculus 0 1672
ENSMUST00000174522 Gne-007 nonsense_mediated_decay Mus_musculus 0 1670
ENSMUST00000172533 Gne-008 nonsense_mediated_decay Mus_musculus 0 1650
ENSMUST00000173234 Gne-009 protein_coding Mus_musculus 0 809
ENSMUST00000172514 Gne-014 retained_intron Mus_musculus 0 562
ENSMUST00000173274 Gne-011 protein_coding Mus_musculus 0 562
ENSMUST00000173976 Gne-013 retained_intron Mus_musculus 0 560
ENSMUST00000144985 Gne-003 protein_coding Mus_musculus 0 429
ENSMUST00000133709 Gne-006 nonsense_mediated_decay Mus_musculus 0 309
ENSMUST00000173569 Gne-012 processed_transcript Mus_musculus 0 285
ENSMUST00000173383 Gne-010 protein_coding Mus_musculus 0 274
ENSMUST00000128439 Gne-004 protein_coding Mus_musculus 1e-29 135
ENSMUST00000140724 Gne-005 protein_coding Mus_musculus 2e-27 128

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