C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540797 USP3-202 ENSG00000140455 9606 + 15:63504511-63594640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartLiverLungMuscleOvaryTestisENST00000540797
Transcript ID Adrenal Colon Heart Liver Lung Muscle Ovary Testis
ENST00000540797 2.564±0.00 1.541±0.00 0.421±0.00 0.585±0.00 1.014±0.00 0.312±0.00 3.802±0.00 1.867±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 IMP mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 TAS ubiquitin-specific protease activity
GO:0006281 IMP DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0031647 IDA regulation of protein stability
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IPI histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174387 Usp3-011 protein_coding Mus_musculus 0 2263
ENSMUST00000127569 Usp3-001 protein_coding Mus_musculus 0 1965
ENSMUST00000139547 Usp3-003 nonsense_mediated_decay Mus_musculus 0 1882
ENSMUST00000098613 Usp3-002 protein_coding Mus_musculus 0 1432
ENSMUST00000034940 Usp3-004 retained_intron Mus_musculus 0 1304
ENSMUST00000124694 Usp3-007 processed_transcript Mus_musculus 0 562
ENSMUST00000150840 Usp3-009 retained_intron Mus_musculus 0 544
ENSMUST00000154476 Usp3-008 retained_intron Mus_musculus 0 440
ENSMUST00000132255 Usp3-010 retained_intron Mus_musculus 0 390
ENSMUST00000124519 Usp3-006 retained_intron Mus_musculus 0 235
ENSMUST00000139952 Usp3-005 processed_transcript Mus_musculus 3e-20 106
ENSMUST00000179332 5730455P16Rik-201 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000103225 5730455P16Rik-001 protein_coding Mus_musculus 0.0000002 64

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