C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zgc:171759
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000152735 zgc:171759-001 ENSDARG00000086591 7955 + 25:37352915-37359410 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverENSDART00000152735
Transcript ID Brain Heart Liver
ENSDART00000152735 0.263±0.12 0.077±0.03 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0004 UCNEbase 25:37216824-37485434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006334 IEA nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 351
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 331
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 283
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 348
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 339
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 351
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 350
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 350
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 326
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 348
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 353
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 344
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 350
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 355
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 394
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 396
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 361
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 344
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 353
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 353
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 344
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 344
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 342
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 344
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 359
ENST00000541790 HIST1H2BG-001 protein_coding Homo_sapiens 0 305
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 361
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 344
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 355
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 344
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 355
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 339
ENST00000615966 HIST1H2BB-001 protein_coding Homo_sapiens 0 298
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 364
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 326

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