C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541970 PDCD2-001 ENSG00000071994 9606 - 6:170575295-170584660 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541970
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541970 1.501±0.00 1.408±0.00 3.096±0.00 1.823±0.00 3.163±0.00 2.198±0.09 1.245±0.00 1.505±0.00 5.546±0.00 2.450±0.18 4.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0012501 IEA programmed cell death
GO:0019899 IPI enzyme binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054450 Pdcd2-001 protein_coding Mus_musculus 0 983
ENSMUST00000125709 Pdcd2-005 retained_intron Mus_musculus 0 350
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 198

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