C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 7 (herpes virus-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542333 USP7-003 ENSG00000187555 9606 - 16:8902143-8949653 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastTestisENST00000542333
Transcript ID Breast Testis
ENST00000542333 3.864±0.00 46.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EV CIL_0000EV_0001 CGP 16:8852942-8964514
CIL_0000EN CIL_0000EN_0001 CGP 16:8892094-9121640

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161046 Usp7-002 protein_coding Mus_musculus 0 2122
ENSMUST00000160405 Usp7-001 protein_coding Mus_musculus 0 2122
ENSMUST00000162445 Usp7-004 processed_transcript Mus_musculus 0 1982
ENSMUST00000172505 Usp7-013 nonsense_mediated_decay Mus_musculus 0 1742
ENSMUST00000160326 Usp7-003 nonsense_mediated_decay Mus_musculus 0 1618
ENSMUST00000159287 Usp7-007 retained_intron Mus_musculus 0 641
ENSMUST00000159281 Usp7-011 retained_intron Mus_musculus 0 331
ENSMUST00000162929 Usp7-005 retained_intron Mus_musculus 0 324
ENSMUST00000159503 Usp7-009 retained_intron Mus_musculus 0 302
ENSMUST00000159509 Usp7-008 retained_intron Mus_musculus 0 287
ENSMUST00000162141 Usp7-010 retained_intron Mus_musculus 0 228
ENSMUST00000173939 Usp7-012 retained_intron Mus_musculus 0.0000000001 73

Loading