C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542440 SETD1B-001 ENSG00000139718 9606 + 12:121804180-121832584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMusclePlacentaENST00000542440
Transcript ID Lung Muscle Placenta
ENST00000542440 1.675±0.00 0.516±0.12 3.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006S CIL_00006S_0002 CGP 12:121777754-121832584
CIL_0002ZI CIL_0002ZI_0001 CGP 12:121804180-121863596

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035097 IDA histone methyltransferase complex
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0048188 IDA Set1C/COMPASS complex
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163030 Setd1b-001 protein_coding Mus_musculus 0 3727
ENSMUST00000174836 Setd1b-002 protein_coding Mus_musculus 0 3727
ENSMUST00000056053 Setd1b-201 protein_coding Mus_musculus 0 3602
ENSMUST00000100731 Setd1b-004 retained_intron Mus_musculus 0 2285
ENSMUST00000173221 Setd1b-005 retained_intron Mus_musculus 0 335
ENSMUST00000162839 Setd1b-003 protein_coding Mus_musculus 0 326
ENSDART00000083821 setd1a-201 protein_coding Danio_rerio 0.000000000000004 90
ENSDART00000125022 setd1a-202 protein_coding Danio_rerio 0.000000000000004 90
ENSDART00000131774 setd1a-001 protein_coding Danio_rerio 0.000000000000004 90

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