C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542629 PPFIBP1-008 ENSG00000110841 9606 + 12:27524224-27692882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000542629
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000542629 3.246±0.00 1.496±0.00 4.051±0.00 2.672±0.32 2.707±0.00 4.031±0.00 4.930±0.00 4.756±0.54 5.191±0.00 1.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0001 CGP 12:27466810-27695564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016631 Ppfibp1-001 protein_coding Mus_musculus 0 3094
ENSMUST00000123902 Ppfibp1-004 retained_intron Mus_musculus 0 2065
ENSMUST00000111623 Ppfibp1-002 protein_coding Mus_musculus 0 2061
ENSMUST00000155415 Ppfibp1-009 protein_coding Mus_musculus 0 483
ENSMUST00000136837 Ppfibp1-010 protein_coding Mus_musculus 0 313
ENSMUST00000149203 Ppfibp1-005 retained_intron Mus_musculus 9e-33 147

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