C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543226 TRAPPC2P1-002 ENSG00000256060 9606 + 19:57363511-57365353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLungMuscleOvaryPlacentaTestisENST00000543226
Transcript ID Brain Heart Lung Muscle Ovary Placenta Testis
ENST00000543226 6.075±0.00 6.926±0.00 5.595±0.00 6.973±0.00 7.409±3.83 7.180±2.22 9.609±0.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005801 IEA cis-Golgi network
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006888 IEA:NAS ER to Golgi vesicle-mediated transport
GO:0008134 IPI transcription factor binding
GO:0044325 IPI ion channel binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116495 Trappc2-001 protein_coding Mus_musculus 0 568
ENSMUST00000112194 Trappc2-003 protein_coding Mus_musculus 0 566
ENSMUST00000109098 0610009B22Rik-002 protein_coding Mus_musculus 0 497
ENSMUST00000007921 0610009B22Rik-001 protein_coding Mus_musculus 0 497
ENSMUST00000120556 Gm13080-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000154573 Trappc2-004 retained_intron Mus_musculus 0 320
ENSMUST00000112192 Trappc2-002 protein_coding Mus_musculus 0 283

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