C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002KR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045789-ENSDARG00000045790 CGP 7955 4:8351360-8422161
GeneTranscriptPositionBiotype
ENSDARG00000045789 (srgap2b)
SLIT-ROBO Rho GTPase activating protein 2b 		ENSDART00000014897 (srgap2b-001) 8351360-8406611 protein_coding
ENSDART00000048707 (srgap2b-201) 8351789-8405486 protein_coding
ENSDARG00000045790 (C4H12orf66)
chromosome 12 open reading frame 66 		ENSDART00000067311 (C4H12orf66-201) 8410395-8422122 protein_coding
ENSDART00000148155 (C4H12orf66-001) 8410643-8422161 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002KR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196935-ENSG00000174206 CGP 9606 12:63844293-64222296
GeneTranscriptPositionBiotype
ENSG00000174206 (C12orf66)
chromosome 12 open reading frame 66 		ENST00000311915 (C12orf66-003) 64186316-64222265 protein_coding
ENST00000398055 (C12orf66-001) 64191083-64222291 protein_coding
ENST00000540673 (C12orf66-004) 64221497-64222263 processed_transcript
ENST00000544871 (C12orf66-002) 64192639-64222296 protein_coding
ENST00000615991 (C12orf66-005) 64221699-64222272 processed_transcript
ENSG00000196935 (SRGAP1)
SLIT-ROBO Rho GTPase activating protein 1 		ENST00000355086 (SRGAP1-001) 63844293-64162221 protein_coding
ENST00000537556 (SRGAP1-002) 63844803-64081924 retained_intron
ENST00000537585 (SRGAP1-006) 64111811-64116005 retained_intron
ENST00000542381 (SRGAP1-005) 64042794-64043627 retained_intron
ENST00000542841 (SRGAP1-004) 64127637-64142566 retained_intron
ENST00000543397 (SRGAP1-003) 63982525-64143780 protein_coding
ENSG00000242087 (RPL36AP41)
ribosomal protein L36a pseudogene 41 		ENST00000493820 (RPL36AP41-001) 63871739-63872044 processed_pseudogene
ENSG00000255780 (RP11-1029F8.1)
 ENST00000537101 (RP11-1029F8.1-001) 64032412-64032665 processed_pseudogene
ENSG00000256399 (RP11-274J7.3)
 ENST00000534985 (RP11-274J7.3-001) 63887379-63888598 processed_pseudogene
ENSG00000256571 (RP11-274J7.2)
 ENST00000541870 (RP11-274J7.2-001) 63878787-63879474 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002KR_0001ENSDARG00000045789ENSDART00000014897ENSDART00000048707ENSDARG00000045790ENSDART00000067311ENSDART00000148155CIL_0002KR_0002ENSG00000174206ENST00000311915ENST00000398055ENST00000540673ENST00000544871ENST00000615991ENSG00000196935ENST00000355086ENST00000537556ENST00000537585ENST00000542381ENST00000542841ENST00000543397ENSG00000242087ENST00000493820ENSG00000255780ENST00000537101ENSG00000256399ENST00000534985ENSG00000256571ENST00000541870
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002KR_0001ENSDARG00000045789ENSDART00000014897ENSDARG00000045790ENSDART00000067311ENSDART00000148155CIL_0002KR_0002ENSG00000174206ENST00000311915ENST00000398055ENST00000540673ENST00000544871ENSG00000196935ENST00000355086ENST00000537556ENST00000542841ENST00000543397ENSG00000242087ENST00000493820ENSG00000255780ENST00000537101ENSG00000256399ENST00000534985ENSG00000256571ENST00000541870
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045789 ENSDART00000014897 N/A N/A N/A N/A N/A N/A 0.074±0.04 0.097±0.00 N/A N/A 0.118±0.00 N/A N/A N/A
ENSDART00000048707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000045790 ENSDART00000067311 N/A N/A N/A 1.269±0.60 N/A N/A 1.556±1.57 1.369±0.25 N/A N/A 0.433±0.00 N/A N/A N/A
ENSDART00000148155 N/A N/A N/A 2.078±0.93 N/A N/A 3.570±2.54 0.229±0.00 0.770±0.00 N/A 1.392±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174206 ENST00000311915 1.052±0.00 2.123±0.00 0.208±0.00 0.871±0.45 0.578±0.00 0.454±0.00 0.134±0.07 0.571±0.08 0.601±0.03 0.599±0.04 1.464±0.00 0.657±0.16 0.226±0.10 0.549±0.00
ENST00000398055 N/A 0.798±0.00 0.178±0.00 1.185±0.00 N/A N/A 0.077±0.00 0.625±0.00 0.297±0.02 0.333±0.00 N/A 0.393±0.13 0.247±0.02 0.970±0.00
ENST00000540673 N/A N/A N/A N/A 1.610±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544871 0.311±0.00 N/A 0.583±0.00 0.496±0.00 0.427±0.00 0.298±0.00 N/A 0.563±0.20 0.647±0.02 0.435±0.00 N/A 0.526±0.16 0.323±0.10 1.020±0.00
ENST00000615991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196935 ENST00000355086 0.615±0.00 1.027±0.00 0.268±0.00 0.120±0.03 0.407±0.14 0.325±0.00 0.041±0.01 N/A 0.180±0.08 0.380±0.06 0.046±0.00 0.583±0.18 0.158±0.11 0.598±0.00
ENST00000537556 N/A N/A 0.654±0.00 N/A 1.031±0.00 1.319±0.00 N/A 0.722±0.00 N/A 0.704±0.00 N/A 0.522±0.00 N/A 0.784±0.00
ENST00000537585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.353±0.00 9.657±0.00
ENST00000543397 N/A N/A 0.492±0.00 0.451±0.03 0.765±0.00 0.668±0.00 0.199±0.06 N/A 0.551±0.00 0.673±0.33 0.080±0.05 0.407±0.00 0.225±0.05 1.244±0.26
ENSG00000242087 ENST00000493820 0.197±0.00 0.053±0.00 N/A N/A 0.235±0.00 0.860±0.00 N/A N/A N/A 0.054±0.00 0.095±0.00 0.879±0.89 N/A N/A
ENSG00000255780 ENST00000537101 N/A N/A N/A N/A N/A 0.299±0.00 N/A 0.093±0.00 N/A N/A N/A 0.216±0.00 N/A 0.213±0.00
ENSG00000256399 ENST00000534985 N/A 0.030±0.00 0.122±0.00 0.048±0.00 0.055±0.02 0.395±0.00 0.041±0.03 0.040±0.00 0.150±0.00 0.091±0.00 N/A 0.221±0.18 0.012±0.00 N/A
ENSG00000256571 ENST00000541870 0.143±0.00 0.253±0.00 N/A 0.152±0.01 0.243±0.00 0.718±0.47 0.150±0.00 0.223±0.00 0.408±0.00 0.271±0.21 N/A 0.180±0.00 N/A 0.168±0.02

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