C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000088908 srgap1-201 ENSDARG00000007461 7955 - 18:12311302-12505454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000088908
Transcript ID Brain Heart Kidney Muscle
ENSDART00000088908 4.943±1.53 1.825±0.77 0.512±0.27 0.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023M CIL_00023M_0001 CGP 18:11910098-12321906
CIL_000309 CIL_000309_0001 CGP 18:12104314-12321906
CIL_0006YB CIL_0006YB_0001 CGP 18:12311302-12599686

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060215 Srgap3-003 retained_intron Mus_musculus 0 577
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 0 575
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 0 935
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0 667
ENST00000360413 SRGAP3-002 protein_coding Homo_sapiens 0 841
ENST00000383836 SRGAP3-001 protein_coding Homo_sapiens 0 481
ENST00000433332 SRGAP3-010 processed_transcript Homo_sapiens 0 418
ENST00000470951 SRGAP3-005 retained_intron Homo_sapiens 0 305
ENST00000480750 SRGAP3-009 processed_transcript Homo_sapiens 3e-40 169
ENST00000485983 SRGAP3-004 retained_intron Homo_sapiens 0 363
ENST00000542841 SRGAP1-004 retained_intron Homo_sapiens 0 193
ENST00000543397 SRGAP1-003 protein_coding Homo_sapiens 0 1419
ENST00000618999 SRGAP3-201 protein_coding Homo_sapiens 0 420

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