C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin tail domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543629 LMNTD1-011 ENSG00000152936 9606 - 12:25409307-25526156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000543629
Transcript ID Brain
ENST00000543629 0.163±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X7 CIL_0004X7_0001 CGP 12:25204789-25648579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 8e-37 158
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 8e-37 158
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 2e-33 147
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 8e-32 141
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 8e-32 141
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 8e-32 141
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 3e-31 139
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 1e-29 134
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 6e-28 128
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 1e-25 121
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 1e-25 121
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 4e-25 119
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 4e-25 119

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