C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004X7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133703-ENSG00000152936 CGP 9606 12:25204789-25648579
GeneTranscriptPositionBiotype
ENSG00000133703 (KRAS)
Kirsten rat sarcoma viral oncogene homolog 		ENST00000256078 (KRAS-004) 25209431-25250803 protein_coding
ENST00000311936 (KRAS-001) 25204789-25250931 protein_coding
ENST00000556131 (KRAS-002) 25233819-25250929 protein_coding
ENST00000557334 (KRAS-003) 25209168-25250936 protein_coding
ENSG00000152936 (LMNTD1)
lamin tail domain containing 1 		ENST00000282881 (LMNTD1-008) 25476082-25553244 protein_coding
ENST00000413632 (LMNTD1-004) 25499852-25553281 protein_coding
ENST00000445693 (LMNTD1-003) 25497513-25648554 protein_coding
ENST00000458174 (LMNTD1-001) 25476281-25553283 protein_coding
ENST00000538178 (LMNTD1-009) 25526798-25630750 protein_coding
ENST00000539523 (LMNTD1-010) 25502925-25519961 protein_coding
ENST00000539744 (LMNTD1-002) 25476110-25553252 protein_coding
ENST00000540106 (LMNTD1-007) 25526812-25648544 protein_coding
ENST00000542224 (LMNTD1-005) 25546510-25648579 protein_coding
ENST00000543629 (LMNTD1-011) 25409307-25526156 protein_coding
ENST00000545543 (LMNTD1-006) 25519870-25648562 protein_coding
ENSG00000201439 (RNU4-67P)
RNA, U4 small nuclear 67, pseudogene 		ENST00000364569 (RNU4-67P-201) 25404288-25404428 snRNA
ENSG00000205707 (LYRM5)
LYR motif containing 5 		ENST00000381356 (LYRM5-201) 25195216-25205014 protein_coding
ENST00000553788 (LYRM5-006) 25195277-25209645 protein_coding
ENST00000554266 (LYRM5-004) 25195270-25204172 protein_coding
ENST00000555151 (LYRM5-010) 25195277-25196184 processed_transcript
ENST00000555711 (LYRM5-003) 25195261-25204683 protein_coding
ENST00000556198 (LYRM5-011) 25195553-25204147 protein_coding
ENST00000556351 (LYRM5-005) 25195272-25204666 protein_coding
ENST00000556402 (LYRM5-007) 25195277-25204732 protein_coding
ENST00000556885 (LYRM5-002) 25195265-25205015 protein_coding
ENST00000556927 (LYRM5-009) 25195272-25204670 protein_coding
ENST00000557540 (LYRM5-001) 25195216-25205135 protein_coding
ENSG00000241846 (RP11-318G8.1)
 ENST00000480211 (RP11-318G8.1-001) 25409293-25409445 processed_pseudogene
ENSG00000256079 (RP11-318G8.2)
 ENST00000538746 (RP11-318G8.2-001) 25435581-25436238 processed_pseudogene
ENSG00000274987 (RP11-295I5.3)
 ENST00000612734 (RP11-295I5.3-001) 25210652-25211233 antisense
ENSG00000278743 (RP11-707G18.1)
 ENST00000622671 (RP11-707G18.1-001) 25385670-25386241 lincRNA
ENSG00000279173 (RP11-318G8.4)
 ENST00000625067 (RP11-318G8.4-001) 25423600-25424942 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0004X7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030265-ENSMUSG00000054966 CGP 10090 6:145216699-145614319
GeneTranscriptPositionBiotype
ENSMUSG00000030265 (Kras)
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 		ENSMUST00000032399 (Kras-001) 145216699-145250239 protein_coding
ENSMUST00000111710 (Kras-002) 145220245-145250177 protein_coding
ENSMUST00000123972 (Kras-005) 145219980-145230824 processed_transcript
ENSMUST00000149314 (Kras-004) 145220610-145225557 retained_intron
ENSMUST00000155145 (Kras-003) 145246704-145250202 protein_coding
ENSMUST00000156486 (Kras-006) 145220297-145250170 nonsense_mediated_decay
ENSMUSG00000054966 (Ifltd1)
lamin tail domain containing 1 		ENSMUST00000111706 (Ifltd1-002) 145393459-145450767 protein_coding
ENSMUST00000111708 (Ifltd1-001) 145397210-145434925 protein_coding
ENSMUST00000142122 (Ifltd1-004) 145580541-145613969 processed_transcript
ENSMUST00000144829 (Ifltd1-005) 145543291-145614319 processed_transcript
ENSMUST00000148739 (Ifltd1-003) 145365134-145614273 nonsense_mediated_decay
ENSMUST00000149666 (Ifltd1-006) 145429997-145434081 protein_coding
ENSMUSG00000067344 (Rps25-ps1)
ribosomal protein S25, pseudogene 1 		ENSMUST00000119876 (Rps25-ps1-001) 145266400-145266777 processed_pseudogene
ENSMUSG00000083962 (Gm15707)
predicted gene 15707 		ENSMUST00000118804 (Gm15707-001) 145315613-145316608 processed_pseudogene
ENSMUSG00000086013 (Gm15706)
predicted gene 15706 		ENSMUST00000139612 (Gm15706-001) 145250529-145251849 lincRNA
ENSMUSG00000086722 (Gm15499)
predicted gene 15499 		ENSMUST00000141390 (Gm15499-001) 145441756-145444028 antisense
ENSMUSG00000087204 (1700073E17Rik)
RIKEN cDNA 1700073E17 gene 		ENSMUST00000136180 (1700073E17Rik-004) 145390308-145392049 processed_transcript
ENSMUST00000146858 (1700073E17Rik-003) 145387596-145402179 processed_transcript
ENSMUST00000148424 (1700073E17Rik-001) 145391426-145392166 transcribed_processed_pseudogene
ENSMUST00000152419 (1700073E17Rik-002) 145387597-145392240 processed_transcript
ENSMUSG00000087277 (2010013B24Rik)
RIKEN cDNA 2010013B24 gene 		ENSMUST00000126922 (2010013B24Rik-001) 145303152-145308951 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004X7_0001ENSG00000133703ENST00000256078ENST00000311936ENST00000556131ENST00000557334ENSG00000152936ENST00000282881ENST00000413632ENST00000445693ENST00000458174ENST00000538178ENST00000539523ENST00000539744ENST00000540106ENST00000542224ENST00000543629ENST00000545543ENSG00000201439ENST00000364569ENSG00000205707ENST00000381356ENST00000553788ENST00000554266ENST00000555151ENST00000555711ENST00000556198ENST00000556351ENST00000556402ENST00000556885ENST00000556927ENST00000557540ENSG00000241846ENST00000480211ENSG00000256079ENST00000538746ENSG00000274987ENST00000612734ENSG00000278743ENST00000622671ENSG00000279173ENST00000625067CIL_0004X7_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004X7_0001ENSG00000133703ENST00000256078ENST00000311936ENSG00000152936ENST00000282881ENST00000413632ENST00000445693ENST00000458174ENST00000538178ENST00000539744ENST00000540106ENST00000543629ENSG00000201439ENST00000364569ENSG00000205707ENST00000381356ENST00000556885ENSG00000241846ENST00000480211ENSG00000256079ENST00000538746ENSG00000274987ENST00000612734ENSG00000278743ENST00000622671ENSG00000279173ENST00000625067CIL_0004X7_0002ENSMUSG00000030265ENSMUST00000032399ENSMUST00000111710ENSMUST00000123972ENSMUST00000156486ENSMUSG00000054966ENSMUST00000111706ENSMUST00000111708ENSMUST00000142122ENSMUST00000144829ENSMUST00000148739ENSMUST00000149666ENSMUSG00000067344ENSMUST00000119876ENSMUSG00000083962ENSMUST00000118804ENSMUSG00000086013ENSMUST00000139612ENSMUSG00000086722ENSMUST00000141390ENSMUSG00000087204ENSMUST00000136180ENSMUST00000146858ENSMUST00000148424ENSMUST00000152419ENSMUSG00000087277ENSMUST00000126922
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133703 ENST00000256078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.564±0.00 N/A N/A
ENST00000311936 6.924±0.00 4.940±0.00 2.215±0.00 7.943±1.55 2.309±0.42 3.816±0.56 1.939±0.85 2.502±0.37 1.745±0.20 4.263±1.41 2.523±0.00 3.935±1.01 4.343±1.84 4.194±0.28
ENST00000556131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152936 ENST00000282881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.01
ENST00000413632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.394±0.00
ENST00000445693 0.071±0.00 0.137±0.00 N/A 0.312±0.00 0.135±0.00 0.068±0.00 0.112±0.00 0.187±0.00 0.027±0.00 0.570±0.00 0.009±0.00 0.541±0.00 N/A N/A
ENST00000458174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.511±0.00
ENST00000538178 0.117±0.00 N/A N/A N/A N/A 0.136±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A 0.933±0.00
ENST00000539523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539744 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENST00000540106 N/A N/A N/A 0.531±0.00 N/A N/A N/A N/A N/A 0.169±0.00 N/A 0.903±0.00 N/A N/A
ENST00000542224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543629 N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201439 ENST00000364569 N/A N/A N/A 0.117±0.00 N/A 0.420±0.00 N/A N/A N/A N/A N/A N/A N/A 0.209±0.00
ENSG00000205707 ENST00000381356 N/A N/A N/A 7.820±0.00 4.293±0.00 N/A 3.648±2.09 14.543±0.00 5.217±0.00 N/A N/A N/A N/A 15.411±0.00
ENST00000553788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556885 N/A N/A 3.742±0.00 13.141±0.00 4.270±0.00 8.056±0.00 7.181±5.20 11.013±0.00 15.943±0.00 N/A 6.873±3.98 8.899±0.00 4.510±1.61 14.008±0.26
ENST00000556927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241846 ENST00000480211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A
ENSG00000256079 ENST00000538746 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A 0.016±0.01 N/A 0.092±0.01
ENSG00000274987 ENST00000612734 0.092±0.00 0.557±0.00 N/A 0.300±0.00 0.541±0.27 0.481±0.23 0.081±0.00 0.758±0.20 0.661±0.38 1.288±0.95 N/A 0.655±0.39 0.092±0.00 0.090±0.04
ENSG00000278743 ENST00000622671 0.201±0.00 0.472±0.00 N/A 0.434±0.07 0.568±0.00 0.496±0.00 0.262±0.00 0.375±0.20 0.093±0.04 1.697±0.00 0.194±0.00 0.387±0.18 N/A 0.260±0.11
ENSG00000279173 ENST00000625067 N/A 0.051±0.00 N/A 0.038±0.00 0.068±0.00 N/A 0.014±0.00 0.021±0.00 N/A 0.041±0.00 N/A 0.016±0.00 N/A 0.014±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030265 ENSMUST00000032399 6.327±1.53 2.835±0.65 10.489±1.14 26.116±1.57 5.634±1.35 15.831±5.66 5.290±0.93 6.565±1.34 10.361±4.95 16.339±2.74 3.491±0.45 7.759±1.51 12.115±6.15 2.900±1.11
ENSMUST00000111710 N/A N/A N/A 14.291±0.00 N/A N/A N/A N/A N/A N/A N/A 9.209±0.00 16.040±3.20 4.923±0.00
ENSMUST00000123972 N/A N/A N/A N/A 9.036±1.04 21.338±0.00 N/A N/A N/A 20.044±1.45 N/A 15.108±2.39 N/A 6.249±0.83
ENSMUST00000149314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156486 N/A N/A N/A 18.888±0.00 N/A N/A N/A N/A N/A N/A N/A 10.819±0.00 16.293±0.33 8.263±0.00
ENSMUSG00000054966 ENSMUST00000111706 0.609±0.11 0.155±0.07 0.054±0.01 0.168±0.10 0.104±0.06 0.086±0.03 2.318±0.33 0.121±0.03 0.020±0.01 N/A 0.020±0.00 0.380±0.18 0.105±0.01 N/A
ENSMUST00000111708 N/A 0.045±0.00 N/A N/A 0.069±0.00 0.058±0.02 N/A 0.048±0.00 0.010±0.00 N/A 0.027±0.00 0.099±0.00 0.093±0.05 8.018±2.77
ENSMUST00000142122 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 0.012±0.01 0.279±0.00 0.036±0.03 0.163±0.00 N/A N/A
ENSMUST00000144829 N/A 0.096±0.00 N/A N/A N/A N/A N/A 0.080±0.00 N/A 1.180±0.33 N/A N/A 0.238±0.11 N/A
ENSMUST00000148739 N/A 0.080±0.04 0.011±0.00 N/A 0.049±0.01 0.022±0.00 N/A 0.026±0.01 0.004±0.00 0.324±0.14 0.011±0.00 0.099±0.03 0.043±0.00 N/A
ENSMUST00000149666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 15.713±0.00
ENSMUSG00000067344 ENSMUST00000119876 0.503±0.22 1.039±0.40 0.676±0.19 0.534±0.28 1.003±0.27 2.149±1.18 1.641±1.31 3.098±1.97 2.353±2.34 0.941±0.45 0.348±0.09 1.339±0.75 0.553±0.28 1.705±1.22
ENSMUSG00000083962 ENSMUST00000118804 0.093±0.05 0.292±0.20 0.031±0.00 0.105±0.05 0.300±0.22 0.085±0.01 0.099±0.06 0.054±0.02 0.127±0.07 0.150±0.07 0.052±0.00 0.335±0.29 0.078±0.03 0.081±0.03
ENSMUSG00000086013 ENSMUST00000139612 1.043±0.18 3.366±0.00 2.903±0.99 4.799±2.61 1.435±0.44 N/A 0.623±0.18 2.010±0.39 1.371±0.77 2.308±0.58 0.895±0.34 2.701±1.35 0.792±0.34 1.942±0.87
ENSMUSG00000086722 ENSMUST00000141390 0.151±0.02 N/A N/A N/A 0.204±0.00 N/A 0.130±0.00 0.282±0.00 N/A 0.149±0.00 N/A N/A 0.503±0.00 0.130±0.01
ENSMUSG00000087204 ENSMUST00000136180 0.229±0.08 0.179±0.01 0.068±0.00 0.093±0.02 0.124±0.03 N/A N/A 0.072±0.00 N/A 0.498±0.18 0.064±0.00 0.557±0.33 0.063±0.02 8.563±0.84
ENSMUST00000146858 0.125±0.00 N/A N/A N/A N/A N/A N/A 0.198±0.06 N/A 0.290±0.06 N/A N/A N/A 23.236±5.41
ENSMUST00000148424 0.262±0.15 0.183±0.00 N/A 0.026±0.00 0.169±0.00 N/A 0.820±0.00 N/A 0.009±0.00 0.435±0.00 0.061±0.02 0.379±0.12 N/A N/A
ENSMUST00000152419 0.166±0.03 N/A N/A 0.049±0.03 N/A N/A N/A N/A 0.011±0.00 0.175±0.00 N/A N/A N/A 13.265±1.97
ENSMUSG00000087277 ENSMUST00000126922 0.053±0.00 N/A 0.114±0.00 0.057±0.02 0.157±0.14 N/A 0.049±0.00 0.104±0.00 N/A 0.227±0.10 0.059±0.02 0.052±0.00 0.060±0.02 0.048±0.00

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