C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545869 PDCD2-010 ENSG00000071994 9606 - 6:170577594-170584605 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000545869
Transcript ID Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000545869 8.799±0.00 10.949±0.00 5.299±0.00 10.420±0.00 6.938±0.00 6.334±0.00 58.353±0.00 9.910±0.00 8.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054450 Pdcd2-001 protein_coding Mus_musculus 0 610
ENSMUST00000125709 Pdcd2-005 retained_intron Mus_musculus 0 294
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 7e-39 165

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