C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020215 Socs2-001 ENSMUSG00000020027 10090 - 10:95411490-95416857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020215 8.019±6.34 11.327±1.17 4.758±1.14 11.693±7.97 12.587±3.53 11.214±1.68 8.488±1.11 13.309±3.57 8.199±6.57 30.872±10.86 2.631±1.29 53.289±14.69 2.416±1.98 0.695±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YM CIL_0004YM_0002 CGP 10:95174746-95417180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IEA regulation of cell growth
GO:0005131 IPI growth hormone receptor binding
GO:0005159 IEA:ISS insulin-like growth factor receptor binding
GO:0005737 IEA cytoplasm
GO:0007595 IGI lactation
GO:0008269 IEA JAK pathway signal transduction adaptor activity
GO:0016567 IEA protein ubiquitination
GO:0035556 IMP intracellular signal transduction
GO:0040014 IMP regulation of multicellular organism growth
GO:0040015 IGI negative regulation of multicellular organism growth
GO:0045666 IDA positive regulation of neuron differentiation
GO:0046426 IGI negative regulation of JAK-STAT cascade
GO:0060749 IGI mammary gland alveolus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340600 SOCS2-001 protein_coding Homo_sapiens 0 896
ENST00000444011 RP3-522J7.5-001 processed_pseudogene Homo_sapiens 4.06377e-44 182
ENST00000536696 SOCS2-007 protein_coding Homo_sapiens 0 1061
ENST00000548091 SOCS2-008 protein_coding Homo_sapiens 0 660
ENST00000548537 SOCS2-005 protein_coding Homo_sapiens 0 651
ENST00000549122 SOCS2-006 protein_coding Homo_sapiens 0 891
ENST00000549206 SOCS2-002 protein_coding Homo_sapiens 0 889
ENST00000549510 SOCS2-013 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000549887 SOCS2-009 protein_coding Homo_sapiens 0 712
ENST00000551556 SOCS2-011 protein_coding Homo_sapiens 0 891
ENST00000551883 SOCS2-012 protein_coding Homo_sapiens 0 279
ENST00000622746 SOCS2-201 protein_coding Homo_sapiens 0 889

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