C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549612 ATF1-005 ENSG00000123268 9606 + 12:50764078-50809475 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungMuscleOvaryENST00000549612
Transcript ID Bladder Brain Breast Colon Liver Lung Muscle Ovary
ENST00000549612 2.714±0.00 1.664±0.00 6.018±0.00 4.702±0.00 3.454±0.00 3.395±0.00 12.990±0.00 5.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000062 CIL_000062_0001 CGP 12:50504985-50821122
CIL_00005M CIL_00005M_0001 CGP 12:50763710-50887884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023769 Atf1-001 protein_coding Mus_musculus 1e-35 154
ENSMUST00000163855 Atf1-006 protein_coding Mus_musculus 3e-35 152
ENSMUST00000172154 Atf1-005 protein_coding Mus_musculus 2e-18 97
ENSMUST00000166809 Atf1-007 retained_intron Mus_musculus 6e-18 95
ENSMUST00000165804 Atf1-004 protein_coding Mus_musculus 6e-18 95
ENSMUST00000169408 Atf1-002 nonsense_mediated_decay Mus_musculus 2e-17 94
ENSMUST00000171869 Atf1-008 protein_coding Mus_musculus 0.000000000000001 88

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