C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000551831 ATF1-002 ENSG00000123268 9606 + 12:50764480-50820010 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyMuscleENST00000551831
Transcript ID Bladder Breast Heart Kidney Muscle
ENST00000551831 1.628±0.00 1.176±0.00 2.030±0.00 7.520±0.00 1.575±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000062 CIL_000062_0001 CGP 12:50504985-50821122
CIL_00005M CIL_00005M_0001 CGP 12:50763710-50887884

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169408 Atf1-002 nonsense_mediated_decay Mus_musculus 0 662
ENSMUST00000168103 Atf1-003 processed_transcript Mus_musculus 0 573
ENSMUST00000023769 Atf1-001 protein_coding Mus_musculus 0 573
ENSMUST00000120608 Gm1862-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000166435 Atf1-009 protein_coding Mus_musculus 0 292
ENSMUST00000166809 Atf1-007 retained_intron Mus_musculus 1e-17 95
ENSMUST00000165804 Atf1-004 protein_coding Mus_musculus 1e-17 95
ENSMUST00000172154 Atf1-005 protein_coding Mus_musculus 4e-17 94
ENSMUST00000163855 Atf1-006 protein_coding Mus_musculus 4e-17 94
ENSMUST00000171869 Atf1-008 protein_coding Mus_musculus 0.000000000000006 86

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