C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | poly(A) binding protein, nuclear 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000553960  |
PABPN1-008 |
ENSG00000100836 |
9606 | + |
14:23323263-23324645  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00090C | CIL_00090C_0001 | VISTA | 14:23078458-23681621 |
| CIL_0009BW | CIL_0009BW_0001 | VISTA | 14:23137378-23739005 |
| CIL_0008Q4 | CIL_0008Q4_0001 | VISTA | 14:23138150-23738498 |
| CIL_0008QH | CIL_0008QH_0001 | VISTA | 14:23142404-23743714 |
| CIL_00051H | CIL_00051H_0001 | CGP | 14:23298790-23325369 |
| CIL_00051J | CIL_00051J_0001 | CGP | 14:23306835-23326185 |
| CIL_00051C | CIL_00051C_0001 | CGP | 14:23321289-23352912 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000141446
|
Pabpn1-005 | protein_coding | Mus_musculus | 0 | 603 |
|
ENSMUST00000116476
|
Pabpn1-003 | protein_coding | Mus_musculus | 0 | 603 |
|
ENSMUST00000139985
|
Pabpn1-006 | protein_coding | Mus_musculus | 0 | 590 |
|
ENSMUST00000134077
|
Gm20521-001 | protein_coding | Mus_musculus | 0 | 516 |
|
ENSMUST00000172557
|
Pabpn1-009 | protein_coding | Mus_musculus | 0 | 516 |
|
ENSMUST00000172695
|
Pabpn1-008 | nonsense_mediated_decay | Mus_musculus | 0 | 516 |
|
ENSMUST00000022808
|
Pabpn1-001 | protein_coding | Mus_musculus | 0 | 516 |
|
ENSMUST00000140691
|
Pabpn1-004 | protein_coding | Mus_musculus | 0 | 387 |
|
ENSMUST00000150975
|
Pabpn1-002 | protein_coding | Mus_musculus | 0 | 307 |
|
ENSMUST00000146271
|
Pabpn1-007 | protein_coding | Mus_musculus | 1e-25 | 121 |
