C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 20521
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134077 Gm20521-001 ENSMUSG00000092232 10090 + 14:54883441-54898137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000134077
Transcript ID Colon
ENSMUST00000134077 22.801±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003LS CIL_0003LS_0002 CGP 14:54872669-54888234
CIL_00051H CIL_00051H_0002 CGP 14:54883377-54898137
CIL_00051J CIL_00051J_0002 CGP 14:54883441-54898169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005741 IBA mitochondrial outer membrane
GO:0006378 TAS mRNA polyadenylation
GO:0008143 TAS poly(A) binding
GO:0008630 IBA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0042803 IBA protein homodimerization activity
GO:0043066 IBA negative regulation of apoptotic process
GO:0046982 IBA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0097192 IBA extrinsic apoptotic signaling pathway in absence of ligand
GO:2001243 IBA negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216727 PABPN1-001 protein_coding Homo_sapiens 0 1007
ENST00000250405 BCL2L2-001 protein_coding Homo_sapiens 0 789
ENST00000339844 ZNF28-006 protein_coding Homo_sapiens 0 287
ENST00000391782 AL590762.11-001 processed_pseudogene Homo_sapiens 0 580
ENST00000397276 PABPN1-003 protein_coding Homo_sapiens 0 795
ENST00000536597 CTD-2102P23.1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000553781 BCL2L2-PABPN1-001 protein_coding Homo_sapiens 0 1792
ENST00000553824 BCL2L2-002 protein_coding Homo_sapiens 0 348
ENST00000553960 PABPN1-008 retained_intron Homo_sapiens 0 516
ENST00000554062 PABPN1-007 retained_intron Homo_sapiens 0 496
ENST00000554635 BCL2L2-005 protein_coding Homo_sapiens 0 420
ENST00000555295 PABPN1-009 protein_coding Homo_sapiens 0 401
ENST00000556100 BCL2L2-PABPN1-003 processed_transcript Homo_sapiens 0 761
ENST00000556599 BCL2L2-006 protein_coding Homo_sapiens 0 357
ENST00000556809 PABPN1-005 retained_intron Homo_sapiens 0 283
ENST00000556821 PABPN1-004 protein_coding Homo_sapiens 0 889
ENST00000557008 BCL2L2-PABPN1-002 protein_coding Homo_sapiens 0 1664
ENST00000557236 BCL2L2-003 protein_coding Homo_sapiens 0 723
ENST00000557579 BCL2L2-004 protein_coding Homo_sapiens 0 721
ENST00000557702 PABPN1-006 protein_coding Homo_sapiens 0 795

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