C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SKI family transcriptional corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554240 SKOR1-002 ENSG00000188779 9606 + 15:67823557-67834538 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLungOvaryPlacentaENST00000554240
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Lung Ovary Placenta
ENST00000554240 0.195±0.00 0.099±0.00 0.574±0.00 0.038±0.00 0.105±0.00 0.022±0.00 0.038±0.02 0.207±0.00 0.116±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DX CIL_0008DX_0001 VISTA 15:67486945-68088375
CIL_00098T CIL_00098T_0001 VISTA 15:67539824-68142788
CIL_0008FO CIL_0008FO_0001 VISTA 15:67583922-68185582
CIL_0004L4 CIL_0004L4_0002 CGP 15:67819704-68198603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IEA transcription corepressor activity
GO:0005634 IEA nucleus
GO:0030514 IEA negative regulation of BMP signaling pathway
GO:0046332 IEA SMAD binding
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116613 Skor1-003 protein_coding Mus_musculus 0 3450
ENSMUST00000055281 Skor1-002 protein_coding Mus_musculus 0 3299
ENSMUST00000119146 Skor1-001 protein_coding Mus_musculus 0 3299
ENSDART00000126643 SKOR2-203 protein_coding Danio_rerio 0 436
ENSDART00000124640 SKOR2-202 protein_coding Danio_rerio 0 436
ENSDART00000101289 SKOR2-201 protein_coding Danio_rerio 0 436
ENSDART00000100104 skor1a-001 protein_coding Danio_rerio 0 265

Loading