C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554659 VTI1B-001 ENSG00000100568 9606 - 14:67647075-67674831 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000554659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000554659 8.731±0.00 5.620±0.00 5.643±0.00 9.078±0.05 9.885±4.49 6.071±0.47 5.129±2.38 13.566±7.58 4.904±0.56 5.459±0.27 5.570±0.22 5.450±1.56 6.838±1.16 5.076±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0001 CGP 14:67581955-67651720
CIL_0001KL CIL_0001KL_0002 CGP 14:67619798-67674831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006904 TAS vesicle docking involved in exocytosis
GO:0008021 ISS synaptic vesicle
GO:0008283 TAS cell proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 TAS:IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0031902 IDA late endosome membrane
GO:0043025 ISS neuronal cell body
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055262 Vti1b-001 protein_coding Mus_musculus 0 1153
ENSMUST00000162789 Vti1b-002 nonsense_mediated_decay Mus_musculus 0 780
ENSMUST00000162569 Vti1b-004 protein_coding Mus_musculus 0 438
ENSMUST00000163031 Vti1b-003 nonsense_mediated_decay Mus_musculus 0 255

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