C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle transport through interaction with t-SNAREs 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100568 VTI1B 9606 - 14:67647075-67674831 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216456 VTI1B-002 67651264-67674610 nonsense_mediated_decay
  ENST00000553619 VTI1B-004 67656480-67660194 retained_intron
  ENST00000554636 VTI1B-006 67651152-67659791 protein_coding
  ENST00000554659 VTI1B-001 67647075-67674831 protein_coding
  ENST00000555543 VTI1B-003 67656510-67674820 nonsense_mediated_decay
  ENST00000556461 VTI1B-005 67651261-67659845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216456ENST00000553619ENST00000554636ENST00000554659ENST00000555543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216456 37.049±0.00 26.490±0.00 N/A 52.872±0.00 54.469±0.00 37.264±0.00 14.073±11.26 N/A N/A N/A N/A 26.111±3.67 23.240±7.72 34.939±5.22
ENST00000553619 N/A N/A N/A N/A N/A N/A 11.342±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000554636 42.906±0.00 38.383±0.00 N/A N/A 73.133±0.00 40.903±0.00 N/A N/A N/A N/A 33.944±0.00 42.315±0.00 44.714±13.48 66.283±18.68
ENST00000554659 8.731±0.00 5.620±0.00 5.643±0.00 9.078±0.05 9.885±4.49 6.071±0.47 5.129±2.38 13.566±7.58 4.904±0.56 5.459±0.27 5.570±0.22 5.450±1.56 6.838±1.16 5.076±0.18
ENST00000555543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.442±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0001 CGP 14:67581955-67651720
CIL_0001KL CIL_0001KL_0002 CGP 14:67619798-67674831

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006904 TAS vesicle docking involved in exocytosis
GO:0008021 ISS synaptic vesicle
GO:0008283 TAS cell proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 TAS:IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0031902 IDA late endosome membrane
GO:0043025 ISS neuronal cell body
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039270 vti1b vesicle transport through interaction with t-SNAREs homolog 1B (yeast) protein_coding Danio_rerio
ENSMUSG00000021124 Vti1b vesicle transport through interaction with t-SNAREs 1B protein_coding Mus_musculus

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