C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162789 Vti1b-002 ENSMUSG00000021124 10090 - 12:79156170-79172448 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162789
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162789 8.995±2.47 48.714±19.42 10.244±0.00 8.196±0.50 13.962±6.80 31.485±6.24 9.885±3.31 19.104±3.14 11.331±6.99 15.985±2.90 12.218±1.74 12.239±7.09 7.823±1.75 4.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0002 CGP 12:79080673-79156301
CIL_0001KL CIL_0001KL_0003 CGP 12:79130777-79172667
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 ISO SNARE binding
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216456 VTI1B-002 nonsense_mediated_decay Homo_sapiens 0 652
ENST00000427516 VTI1BP4-001 processed_pseudogene Homo_sapiens 0 243
ENST00000553306 RP11-1012A1.4-001 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000553619 VTI1B-004 retained_intron Homo_sapiens 0 359
ENST00000554659 VTI1B-001 protein_coding Homo_sapiens 0 780
ENST00000555543 VTI1B-003 nonsense_mediated_decay Homo_sapiens 0 518

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