C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554961 PSMA6-009 ENSG00000100902 9606 + 14:35292393-35317474 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045I CIL_00045I_0001 CGP 14:35122549-35317493
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0001RJ CIL_0001RJ_0001 CGP 14:35278633-35404749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IEA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021412 Psma6-001 protein_coding Mus_musculus 0 612
ENSMUST00000162972 Psma6-004 processed_transcript Mus_musculus 0 497
ENSMUST00000163070 Psma6-002 protein_coding Mus_musculus 0 494
ENSMUST00000162711 Psma6-003 nonsense_mediated_decay Mus_musculus 0 381

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