C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00045I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000258790-ENSG00000100902 CGP 9606 14:35122549-35317493
GeneTranscriptPositionBiotype
ENSG00000100902 (PSMA6)
proteasome (prosome, macropain) subunit, alpha type, 6 		ENST00000261479 (PSMA6-001) 35292357-35317474 protein_coding
ENST00000540871 (PSMA6-002) 35278633-35317467 protein_coding
ENST00000553688 (PSMA6-006) 35292443-35312899 nonsense_mediated_decay
ENST00000553809 (PSMA6-010) 35292398-35317347 protein_coding
ENST00000554457 (PSMA6-005) 35312743-35317472 retained_intron
ENST00000554541 (PSMA6-003) 35292349-35317457 nonsense_mediated_decay
ENST00000554620 (PSMA6-014) 35292393-35314395 nonsense_mediated_decay
ENST00000554843 (PSMA6-008) 35292388-35311052 retained_intron
ENST00000554961 (PSMA6-009) 35292393-35317474 nonsense_mediated_decay
ENST00000555050 (PSMA6-011) 35308775-35310827 retained_intron
ENST00000555764 (PSMA6-004) 35292451-35317493 protein_coding
ENST00000556167 (PSMA6-007) 35292395-35308436 retained_intron
ENST00000556221 (PSMA6-012) 35310833-35317472 protein_coding
ENST00000556506 (PSMA6-013) 35292473-35317419 protein_coding
ENST00000622405 (PSMA6-201) 35292317-35317478 protein_coding
ENSG00000240392 (RPL9P3)
ribosomal protein L9 pseudogene 3 		ENST00000475906 (RPL9P3-001) 35262462-35263036 processed_pseudogene
ENSG00000241052 (RP11-173D9.1)
 ENST00000483361 (RP11-173D9.1-001) 35144021-35144480 processed_pseudogene
ENSG00000256243 (RPL7AP3)
ribosomal protein L7a pseudogene 3 		ENST00000541658 (RPL7AP3-001) 35235180-35235651 processed_pseudogene
ENSG00000259090 (RP11-173D9.5)
 ENST00000556211 (RP11-173D9.5-001) 35157904-35159099 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00045I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021023-ENSMUSG00000021024 CGP 10090 12:55299577-55418454
GeneTranscriptPositionBiotype
ENSMUSG00000021022 (Ppp2r3c)
protein phosphatase 2, regulatory subunit B'', gamma 		ENSMUST00000021410 (Ppp2r3c-201) 55280814-55303000 protein_coding
ENSMUSG00000021023 (1110008L16Rik)
RIKEN cDNA 1110008L16 gene 		ENSMUST00000021411 (1110008L16Rik-001) 55302637-55382496 protein_coding
ENSMUST00000183475 (1110008L16Rik-004) 55303261-55382533 protein_coding
ENSMUST00000183654 (1110008L16Rik-005) 55303286-55382513 protein_coding
ENSMUST00000184249 (1110008L16Rik-002) 55302750-55307589 retained_intron
ENSMUST00000184766 (1110008L16Rik-003) 55303243-55382513 protein_coding
ENSMUST00000184980 (1110008L16Rik-006) 55299577-55382420 protein_coding
ENSMUSG00000021024 (Psma6)
proteasome (prosome, macropain) subunit, alpha type 6 		ENSMUST00000021412 (Psma6-001) 55398775-55418454 protein_coding
ENSMUST00000162711 (Psma6-003) 55398795-55418441 nonsense_mediated_decay
ENSMUST00000162972 (Psma6-004) 55407383-55412287 processed_transcript
ENSMUST00000163070 (Psma6-002) 55384222-55418310 protein_coding
ENSMUSG00000059033 (Rpl18a-ps1)
ribosomal protein L18A, pseudogene 1 		ENSMUST00000161190 (Rpl18a-ps1-001) 55395707-55396229 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00045I_0001ENSG00000100902ENST00000261479ENST00000540871ENST00000553688ENST00000553809ENST00000554457ENST00000554541ENST00000554620ENST00000554843ENST00000554961ENST00000555050ENST00000555764ENST00000556167ENST00000556221ENST00000556506ENST00000622405ENSG00000240392ENST00000475906ENSG00000241052ENST00000483361ENSG00000256243ENST00000541658ENSG00000259090ENST00000556211CIL_00045I_0002ENSMUSG00000021022ENSMUST00000021410ENSMUSG00000021023ENSMUST00000021411ENSMUST00000183475ENSMUST00000183654ENSMUST00000184249ENSMUST00000184766ENSMUST00000184980ENSMUSG00000021024ENSMUST00000021412ENSMUST00000162711ENSMUST00000162972ENSMUST00000163070ENSMUSG00000059033ENSMUST00000161190
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00045I_0001ENSG00000100902ENST00000261479ENST00000540871ENST00000553809ENST00000554541ENSG00000240392ENST00000475906ENSG00000241052ENST00000483361ENSG00000256243ENST00000541658ENSG00000259090ENST00000556211CIL_00045I_0002ENSMUSG00000021022ENSMUST00000021410ENSMUSG00000021023ENSMUST00000021411ENSMUST00000183654ENSMUST00000184766ENSMUST00000184980ENSMUSG00000021024ENSMUST00000021412ENSMUST00000162972ENSMUST00000163070ENSMUSG00000059033ENSMUST00000161190
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100902 ENST00000261479 80.750±0.00 80.035±0.00 13.042±0.00 72.630±16.17 45.242±15.24 54.348±18.06 46.108±23.75 75.191±10.81 53.954±15.23 85.742±10.20 94.175±59.31 84.501±11.65 118.249±33.04 106.895±0.00
ENST00000540871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 108.924±0.00
ENST00000553688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 230.154±0.00 90.942±0.00 225.435±0.00
ENST00000554457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554541 N/A N/A N/A N/A 31.670±4.93 N/A N/A N/A N/A N/A 14.557±0.00 N/A 45.988±0.00 N/A
ENST00000554620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240392 ENST00000475906 0.207±0.00 0.255±0.00 N/A 0.281±0.00 0.319±0.01 0.306±0.00 0.038±0.00 0.084±0.00 0.019±0.00 0.249±0.00 0.131±0.00 0.206±0.00 N/A 0.085±0.01
ENSG00000241052 ENST00000483361 N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000256243 ENST00000541658 N/A 0.072±0.00 N/A 0.309±0.00 0.109±0.00 N/A N/A 1.173±0.00 N/A 0.035±0.00 N/A 0.091±0.03 N/A 0.065±0.00
ENSG00000259090 ENST00000556211 N/A 0.024±0.00 0.089±0.00 0.008±0.00 N/A 0.153±0.00 0.013±0.00 0.240±0.00 0.049±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021022 ENSMUST00000021410 2.676±0.63 1.486±0.43 9.379±1.75 9.806±3.51 2.496±0.34 2.171±0.52 2.775±0.40 3.108±0.42 4.693±4.28 1.386±0.41 6.243±0.96 3.287±2.59 4.440±1.15 10.418±3.15
ENSMUSG00000021023 ENSMUST00000021411 1.722±0.11 0.965±0.23 1.933±0.34 1.751±0.72 1.363±0.58 0.690±0.10 1.209±0.22 2.342±0.43 2.064±0.62 0.892±0.26 1.763±0.34 1.684±0.53 1.678±0.20 2.306±0.30
ENSMUST00000183475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183654 3.092±0.60 2.914±0.91 N/A N/A 2.601±0.64 3.142±0.81 N/A 4.463±1.05 1.690±0.19 N/A N/A 2.761±0.66 N/A N/A
ENSMUST00000184249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184766 N/A N/A 2.273±0.64 N/A N/A 0.810±0.00 N/A N/A 0.941±0.01 N/A 1.445±0.13 3.548±0.18 1.804±0.34 N/A
ENSMUST00000184980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.676±2.03 6.856±0.00 N/A
ENSMUSG00000021024 ENSMUST00000021412 51.475±3.25 19.420±1.13 71.502±3.66 56.479±19.49 35.544±13.61 21.270±1.93 41.615±1.80 41.344±7.50 60.370±21.34 29.032±3.62 71.141±3.55 35.120±19.57 80.950±21.58 74.982±15.13
ENSMUST00000162711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162972 N/A N/A N/A 17.112±0.00 10.410±5.33 11.579±3.88 N/A N/A N/A 6.861±0.00 N/A 14.859±7.85 N/A N/A
ENSMUST00000163070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.259±2.56 16.450±3.10 209.072±49.34
ENSMUSG00000059033 ENSMUST00000161190 0.358±0.13 0.158±0.05 0.268±0.00 0.103±0.03 0.493±0.55 0.345±0.13 0.250±0.02 0.490±0.15 0.117±0.07 0.115±0.05 N/A 0.419±0.20 0.027±0.00 0.335±0.14

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