C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021412 Psma6-001 ENSMUSG00000021024 10090 + 12:55398775-55418454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021412 51.475±3.25 19.420±1.13 71.502±3.66 56.479±19.49 35.544±13.61 21.270±1.93 41.615±1.80 41.344±7.50 60.370±21.34 29.032±3.62 71.141±3.55 35.120±19.57 80.950±21.58 74.982±15.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045I CIL_00045I_0002 CGP 12:55299577-55418454
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0001RJ CIL_0001RJ_0002 CGP 12:55384222-55492647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IDA RNA binding
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0005844 ISS polysome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007519 NAS skeletal muscle tissue development
GO:0016363 IDA nuclear matrix
GO:0019773 ISS proteasome core complex, alpha-subunit complex
GO:0030016 ISS myofibril
GO:0030017 ISS sarcomere
GO:0051059 IEA NF-kappaB binding
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0051603 ISS proteolysis involved in cellular protein catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261479 PSMA6-001 protein_coding Homo_sapiens 0 1288
ENST00000400275 PSMA6P1-001 processed_pseudogene Homo_sapiens 0 1016
ENST00000457574 PSMA6P2-001 processed_pseudogene Homo_sapiens 0 614
ENST00000540871 PSMA6-002 protein_coding Homo_sapiens 0 1155
ENST00000553688 PSMA6-006 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000553809 PSMA6-010 protein_coding Homo_sapiens 0 1062
ENST00000554457 PSMA6-005 retained_intron Homo_sapiens 0 270
ENST00000554541 PSMA6-003 nonsense_mediated_decay Homo_sapiens 0 1007
ENST00000554620 PSMA6-014 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000554843 PSMA6-008 retained_intron Homo_sapiens 0 617
ENST00000554961 PSMA6-009 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000555050 PSMA6-011 retained_intron Homo_sapiens 0 265
ENST00000555764 PSMA6-004 protein_coding Homo_sapiens 0 1158
ENST00000556167 PSMA6-007 retained_intron Homo_sapiens 0 259
ENST00000556221 PSMA6-012 protein_coding Homo_sapiens 0 394
ENST00000556506 PSMA6-013 protein_coding Homo_sapiens 0 861
ENST00000557565 KIAA0391-001 nonsense_mediated_decay Homo_sapiens 0 1160
ENST00000603247 PSMA6P4-001 processed_pseudogene Homo_sapiens 0 704
ENST00000622405 PSMA6-201 protein_coding Homo_sapiens 0 1020

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