C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100902-ENSG00000100906 CGP 9606 14:35278633-35404749
GeneTranscriptPositionBiotype
ENSG00000100902 (PSMA6)
proteasome (prosome, macropain) subunit, alpha type, 6 		ENST00000261479 (PSMA6-001) 35292357-35317474 protein_coding
ENST00000540871 (PSMA6-002) 35278633-35317467 protein_coding
ENST00000553688 (PSMA6-006) 35292443-35312899 nonsense_mediated_decay
ENST00000553809 (PSMA6-010) 35292398-35317347 protein_coding
ENST00000554457 (PSMA6-005) 35312743-35317472 retained_intron
ENST00000554541 (PSMA6-003) 35292349-35317457 nonsense_mediated_decay
ENST00000554620 (PSMA6-014) 35292393-35314395 nonsense_mediated_decay
ENST00000554843 (PSMA6-008) 35292388-35311052 retained_intron
ENST00000554961 (PSMA6-009) 35292393-35317474 nonsense_mediated_decay
ENST00000555050 (PSMA6-011) 35308775-35310827 retained_intron
ENST00000555764 (PSMA6-004) 35292451-35317493 protein_coding
ENST00000556167 (PSMA6-007) 35292395-35308436 retained_intron
ENST00000556221 (PSMA6-012) 35310833-35317472 protein_coding
ENST00000556506 (PSMA6-013) 35292473-35317419 protein_coding
ENST00000622405 (PSMA6-201) 35292317-35317478 protein_coding
ENSG00000100906 (NFKBIA)
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 		ENST00000216797 (NFKBIA-001) 35401511-35404746 protein_coding
ENST00000553342 (NFKBIA-011) 35403748-35404650 protein_coding
ENST00000554001 (NFKBIA-003) 35401534-35404716 nonsense_mediated_decay
ENST00000555371 (NFKBIA-006) 35401926-35403238 retained_intron
ENST00000555629 (NFKBIA-005) 35403532-35404749 retained_intron
ENST00000556664 (NFKBIA-007) 35402653-35403430 retained_intron
ENST00000557100 (NFKBIA-010) 35402442-35404700 processed_transcript
ENST00000557140 (NFKBIA-002) 35401540-35404746 protein_coding
ENST00000557389 (NFKBIA-004) 35401545-35404140 protein_coding
ENST00000557459 (NFKBIA-008) 35403015-35404742 retained_intron
ENSG00000240023 (RP11-561B11.1)
 ENST00000459899 (RP11-561B11.1-001) 35388121-35389069 processed_pseudogene
ENSG00000258860 (RP11-561B11.3)
 ENST00000555024 (RP11-561B11.3-001) 35362232-35363628 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001RJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021024-ENSMUSG00000021025 CGP 10090 12:55384222-55492647
GeneTranscriptPositionBiotype
ENSMUSG00000021024 (Psma6)
proteasome (prosome, macropain) subunit, alpha type 6 		ENSMUST00000021412 (Psma6-001) 55398775-55418454 protein_coding
ENSMUST00000162711 (Psma6-003) 55398795-55418441 nonsense_mediated_decay
ENSMUST00000162972 (Psma6-004) 55407383-55412287 processed_transcript
ENSMUST00000163070 (Psma6-002) 55384222-55418310 protein_coding
ENSMUSG00000021025 (Nfkbia)
nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha 		ENSMUST00000021413 (Nfkbia-201) 55489411-55492647 protein_coding
ENSMUSG00000059033 (Rpl18a-ps1)
ribosomal protein L18A, pseudogene 1 		ENSMUST00000161190 (Rpl18a-ps1-001) 55395707-55396229 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RJ_0001ENSG00000100902ENST00000261479ENST00000540871ENST00000553688ENST00000553809ENST00000554457ENST00000554541ENST00000554620ENST00000554843ENST00000554961ENST00000555050ENST00000555764ENST00000556167ENST00000556221ENST00000556506ENST00000622405ENSG00000100906ENST00000216797ENST00000553342ENST00000554001ENST00000555371ENST00000555629ENST00000556664ENST00000557100ENST00000557140ENST00000557389ENST00000557459ENSG00000240023ENST00000459899ENSG00000258860ENST00000555024CIL_0001RJ_0002ENSMUSG00000021024ENSMUST00000021412ENSMUST00000162711ENSMUST00000162972ENSMUST00000163070ENSMUSG00000021025ENSMUST00000021413ENSMUSG00000059033ENSMUST00000161190
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RJ_0001ENSG00000100902ENST00000261479ENST00000540871ENST00000553809ENST00000554541ENSG00000100906ENST00000216797ENST00000554001ENST00000555371ENST00000557100ENST00000557140ENST00000557389ENSG00000240023ENST00000459899ENSG00000258860ENST00000555024CIL_0001RJ_0002ENSMUSG00000021024ENSMUST00000021412ENSMUST00000162972ENSMUST00000163070ENSMUSG00000021025ENSMUST00000021413ENSMUSG00000059033ENSMUST00000161190
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100902 ENST00000261479 80.750±0.00 80.035±0.00 13.042±0.00 72.630±16.17 45.242±15.24 54.348±18.06 46.108±23.75 75.191±10.81 53.954±15.23 85.742±10.20 94.175±59.31 84.501±11.65 118.249±33.04 106.895±0.00
ENST00000540871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 108.924±0.00
ENST00000553688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 230.154±0.00 90.942±0.00 225.435±0.00
ENST00000554457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554541 N/A N/A N/A N/A 31.670±4.93 N/A N/A N/A N/A N/A 14.557±0.00 N/A 45.988±0.00 N/A
ENST00000554620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100906 ENST00000216797 18.237±0.00 68.348±0.00 3.593±0.00 6.084±2.25 12.193±1.23 25.062±18.25 6.471±2.62 22.730±11.89 9.026±0.36 38.484±17.32 9.992±8.83 53.417±36.46 58.714±28.07 23.220±20.37
ENST00000553342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554001 5.474±0.00 35.593±0.00 N/A 13.559±0.00 13.312±0.00 N/A 18.392±0.00 21.428±0.00 15.653±0.00 196.591±0.00 16.166±13.97 27.031±0.00 18.198±0.00 21.266±0.00
ENST00000555371 N/A N/A 4.129±0.00 4.030±0.00 11.239±0.00 N/A 3.770±0.00 11.140±0.00 15.534±0.00 22.075±0.00 N/A 51.902±31.73 N/A 11.017±0.00
ENST00000555629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557100 N/A N/A N/A 13.262±0.00 N/A N/A N/A N/A N/A 225.496±0.00 37.483±0.00 N/A N/A N/A
ENST00000557140 5.203±0.00 29.242±0.00 N/A N/A 5.791±0.00 N/A 11.531±0.00 14.505±0.00 7.802±0.00 N/A N/A N/A N/A N/A
ENST00000557389 N/A N/A N/A N/A N/A N/A 6.007±0.00 N/A 6.319±3.57 N/A N/A 14.475±10.78 N/A N/A
ENST00000557459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240023 ENST00000459899 N/A 0.138±0.00 N/A 0.088±0.00 0.042±0.00 0.019±0.00 N/A 0.040±0.00 0.035±0.00 0.037±0.00 0.100±0.00 0.023±0.00 N/A N/A
ENSG00000258860 ENST00000555024 N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A 0.067±0.00 0.042±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021024 ENSMUST00000021412 51.475±3.25 19.420±1.13 71.502±3.66 56.479±19.49 35.544±13.61 21.270±1.93 41.615±1.80 41.344±7.50 60.370±21.34 29.032±3.62 71.141±3.55 35.120±19.57 80.950±21.58 74.982±15.13
ENSMUST00000162711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162972 N/A N/A N/A 17.112±0.00 10.410±5.33 11.579±3.88 N/A N/A N/A 6.861±0.00 N/A 14.859±7.85 N/A N/A
ENSMUST00000163070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.259±2.56 16.450±3.10 209.072±49.34
ENSMUSG00000021025 ENSMUST00000021413 30.912±12.80 60.677±5.79 26.250±4.57 9.009±0.95 53.376±27.49 50.918±1.54 17.858±6.47 18.412±3.08 14.878±6.58 78.919±16.36 10.070±1.72 44.335±12.73 16.757±10.63 6.882±0.92
ENSMUSG00000059033 ENSMUST00000161190 0.358±0.13 0.158±0.05 0.268±0.00 0.103±0.03 0.493±0.55 0.345±0.13 0.250±0.02 0.490±0.15 0.117±0.07 0.115±0.05 N/A 0.419±0.20 0.027±0.00 0.335±0.14

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