C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162972 Psma6-004 ENSMUSG00000021024 10090 + 12:55407383-55412287 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryENSMUST00000162972
Transcript ID Brain Breast Colon Lung Ovary
ENSMUST00000162972 17.112±0.00 10.410±5.33 11.579±3.88 6.861±0.00 14.859±7.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045I CIL_00045I_0002 CGP 12:55299577-55418454
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0001RJ CIL_0001RJ_0002 CGP 12:55384222-55492647

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261479 PSMA6-001 protein_coding Homo_sapiens 0 634
ENST00000400275 PSMA6P1-001 processed_pseudogene Homo_sapiens 0 584
ENST00000540871 PSMA6-002 protein_coding Homo_sapiens 0 634
ENST00000553688 PSMA6-006 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000553809 PSMA6-010 protein_coding Homo_sapiens 0 551
ENST00000554457 PSMA6-005 retained_intron Homo_sapiens 8e-30 137
ENST00000554541 PSMA6-003 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000554620 PSMA6-014 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000554843 PSMA6-008 retained_intron Homo_sapiens 0 503
ENST00000554961 PSMA6-009 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000555050 PSMA6-011 retained_intron Homo_sapiens 0 265
ENST00000555764 PSMA6-004 protein_coding Homo_sapiens 0 632
ENST00000556167 PSMA6-007 retained_intron Homo_sapiens 6e-33 145
ENST00000556506 PSMA6-013 protein_coding Homo_sapiens 0 634
ENST00000557565 KIAA0391-001 nonsense_mediated_decay Homo_sapiens 0 634
ENST00000603247 PSMA6P4-001 processed_pseudogene Homo_sapiens 0 470
ENST00000622405 PSMA6-201 protein_coding Homo_sapiens 0 494

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