C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7776
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191211 RP24-148E21.3-001 ENSMUSG00000100018 10090 - 1:91171429-91172148 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000191211
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000191211 0.077±0.00 0.014±0.00 0.077±0.00 0.089±0.03 0.084±0.00 0.177±0.13 0.043±0.02 0.350±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003XU CIL_0003XU_0002 CGP 1:91145089-91225196

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206451 PSME1-001 protein_coding Homo_sapiens 0 710
ENST00000382708 PSME1-005 protein_coding Homo_sapiens 0 584
ENST00000470718 PSME1-004 processed_transcript Homo_sapiens 0 329
ENST00000558112 PSME1-012 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000559123 PSME1-006 protein_coding Homo_sapiens 0 682
ENST00000559741 PSME1-011 retained_intron Homo_sapiens 0 252
ENST00000560420 PSME1-008 retained_intron Homo_sapiens 0 298
ENST00000561059 PSME1-007 retained_intron Homo_sapiens 0 329
ENST00000561142 PSME1-010 retained_intron Homo_sapiens 0 475
ENST00000561435 PSME1-009 protein_coding Homo_sapiens 0 673

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