C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aggrecan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558207 ACAN-001 ENSG00000157766 9606 + 15:88803474-88851521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverMuscleENST00000558207
Transcript ID Adipose Brain Breast Colon Heart Liver Muscle
ENST00000558207 0.073±0.00 0.133±0.00 0.041±0.00 0.063±0.00 0.075±0.00 0.031±0.00 0.098±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011K CIL_00011K_0001 CGP 15:88636153-88875354
CIL_00011L CIL_00011L_0001 CGP 15:88803443-88895626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032835 Acan-201 protein_coding Mus_musculus 0 2156
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0.000002 60
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0.000002 60
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0.000002 60
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0.000002 60
ENSMUST00000006311 Tead4-001 protein_coding Mus_musculus 0.00008 55

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