C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559734 TRAF3-008 ENSG00000131323 9606 + 14:102875687-102905463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000559734
Transcript ID Ovary Placenta Testis
ENST00000559734 3.754±0.00 2.981±0.00 8.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0001 VISTA 14:102447254-103047442
CIL_00040T CIL_00040T_0001 CGP 14:102777476-102933596

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001817 IEA regulation of cytokine production
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0008063 IEA Toll signaling pathway
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0033209 IEA tumor necrosis factor-mediated signaling pathway
GO:0045087 IEA innate immune response
GO:0050688 IEA regulation of defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143395 Traf3-004 retained_intron Mus_musculus 0 848
ENSMUST00000021706 Traf3-001 protein_coding Mus_musculus 0 848
ENSMUST00000060274 Traf3-201 protein_coding Mus_musculus 0 846
ENSMUST00000117269 Traf3-002 protein_coding Mus_musculus 0 846

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