C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131323-ENSG00000166126 CGP 9606 14:102777476-102933596
GeneTranscriptPositionBiotype
ENSG00000131323 (TRAF3)
TNF receptor-associated factor 3 		ENST00000347662 (TRAF3-201) 102777479-102911499 protein_coding
ENST00000351691 (TRAF3-004) 102830354-102906255 protein_coding
ENST00000392745 (TRAF3-005) 102777557-102906261 protein_coding
ENST00000539721 (TRAF3-002) 102777602-102906021 protein_coding
ENST00000558700 (TRAF3-007) 102871927-102897307 nonsense_mediated_decay
ENST00000558880 (TRAF3-009) 102875675-102876677 retained_intron
ENST00000559734 (TRAF3-008) 102875687-102905463 protein_coding
ENST00000560371 (TRAF3-001) 102777476-102911500 protein_coding
ENST00000560463 (TRAF3-006) 102777618-102871953 protein_coding
ENSG00000166126 (AMN)
amnion associated transmembrane protein 		ENST00000299155 (AMN-001) 102922656-102931192 protein_coding
ENST00000541086 (AMN-002) 102922922-102930841 retained_intron
ENST00000558590 (AMN-003) 102928645-102933596 retained_intron
ENST00000559442 (AMN-005) 102928692-102929475 retained_intron
ENST00000559507 (AMN-004) 102930107-102930619 retained_intron
ENST00000559525 (AMN-006) 102928809-102929475 protein_coding
ENST00000559789 (AMN-007) 102928830-102930591 protein_coding
ENSG00000198752 (CDC42BPB)
CDC42 binding protein kinase beta (DMPK-like) 		ENST00000361246 (CDC42BPB-001) 102932379-103057462 protein_coding
ENST00000558321 (CDC42BPB-006) 102986298-103004023 retained_intron
ENST00000558867 (CDC42BPB-004) 102944011-102945331 protein_coding
ENST00000559043 (CDC42BPB-002) 102944043-102968532 protein_coding
ENST00000559245 (CDC42BPB-007) 102943813-102945724 retained_intron
ENST00000559790 (CDC42BPB-008) 102939916-102940726 retained_intron
ENST00000560492 (CDC42BPB-005) 102939908-102940747 retained_intron
ENST00000561271 (CDC42BPB-003) 102986510-103004279 retained_intron
ENSG00000206969 (RNU6-1316P)
RNA, U6 small nuclear 1316, pseudogene 		ENST00000384242 (RNU6-1316P-201) 102865856-102865963 snRNA
ENSG00000211990 (AL117209.1)
 ENST00000390701 (AL117209.1-201) 102879621-102879738 miRNA
ENSG00000259515 (RP11-365N19.2)
 ENST00000560931 (RP11-365N19.2-001) 102933574-102937177 antisense
CIL_00040T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021277-ENSMUSG00000021278 CGP 10090 12:111166370-111276426
GeneTranscriptPositionBiotype
ENSMUSG00000021277 (Traf3)
TNF receptor-associated factor 3 		ENSMUST00000021706 (Traf3-001) 111166463-111267148 protein_coding
ENSMUST00000060274 (Traf3-201) 111166548-111267144 protein_coding
ENSMUST00000117269 (Traf3-002) 111166370-111267153 protein_coding
ENSMUST00000139162 (Traf3-003) 111166486-111239077 protein_coding
ENSMUST00000143395 (Traf3-004) 111248483-111262560 retained_intron
ENSMUSG00000021278 (Amn)
amnionless 		ENSMUST00000021707 (Amn-201) 111271111-111276426 protein_coding
ENSMUSG00000083193 (4930595D18Rik)
RIKEN cDNA 4930595D18 gene 		ENSMUST00000121608 (4930595D18Rik-001) 111159850-111184491 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040T_0001ENSG00000131323ENST00000347662ENST00000351691ENST00000392745ENST00000539721ENST00000558700ENST00000558880ENST00000559734ENST00000560371ENST00000560463ENSG00000166126ENST00000299155ENST00000541086ENST00000558590ENST00000559442ENST00000559507ENST00000559525ENST00000559789ENSG00000198752ENST00000361246ENST00000558321ENST00000558867ENST00000559043ENST00000559245ENST00000559790ENST00000560492ENST00000561271ENSG00000206969ENST00000384242ENSG00000211990ENST00000390701ENSG00000259515ENST00000560931CIL_00040T_0002ENSMUSG00000021277ENSMUST00000021706ENSMUST00000060274ENSMUST00000117269ENSMUST00000139162ENSMUST00000143395ENSMUSG00000021278ENSMUST00000021707ENSMUSG00000083193ENSMUST00000121608
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040T_0001ENSG00000131323ENST00000347662ENST00000351691ENST00000392745ENST00000539721ENST00000558700ENST00000558880ENST00000559734ENST00000560371ENSG00000166126ENST00000299155ENSG00000198752ENST00000361246ENSG00000206969ENST00000384242ENSG00000211990ENST00000390701ENSG00000259515ENST00000560931CIL_00040T_0002ENSMUSG00000021277ENSMUST00000021706ENSMUST00000060274ENSMUST00000117269ENSMUST00000143395ENSMUSG00000021278ENSMUST00000021707ENSMUSG00000083193ENSMUST00000121608
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131323 ENST00000347662 N/A 3.230±0.00 0.333±0.00 1.160±0.00 0.876±0.00 1.307±0.00 0.895±0.00 0.616±0.00 N/A N/A 0.415±0.00 0.524±0.06 0.623±0.00 N/A
ENST00000351691 N/A N/A N/A 1.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392745 N/A N/A N/A N/A 1.911±0.00 2.738±0.00 0.227±0.00 1.287±0.00 1.453±0.00 1.152±0.00 N/A 1.171±0.00 N/A N/A
ENST00000539721 1.205±0.00 N/A N/A N/A N/A N/A 0.273±0.00 N/A N/A 1.876±0.00 0.272±0.00 1.562±0.34 1.523±0.00 5.008±0.00
ENST00000558700 N/A N/A 3.554±0.00 N/A N/A N/A N/A 1.601±0.00 N/A N/A 0.569±0.00 N/A N/A N/A
ENST00000558880 N/A N/A 22.314±0.00 19.107±0.00 9.296±0.00 N/A N/A 4.085±0.00 14.022±0.00 15.328±0.00 N/A 11.090±0.00 N/A N/A
ENST00000559734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.754±0.00 2.981±0.00 8.011±0.00
ENST00000560371 1.642±0.00 4.929±0.00 0.503±0.00 1.187±0.48 1.712±1.13 0.802±0.00 1.700±0.00 1.317±0.00 0.980±0.21 1.612±0.70 N/A 2.042±0.61 1.282±0.57 1.105±0.00
ENST00000560463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166126 ENST00000299155 N/A N/A N/A N/A N/A N/A N/A 52.225±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198752 ENST00000361246 23.766±0.00 6.392±0.00 2.887±0.00 14.857±11.27 19.952±0.00 20.083±0.00 7.379±6.41 1.016±0.00 3.707±0.00 N/A 3.124±2.47 9.043±6.97 15.132±2.75 19.248±0.73
ENST00000558321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206969 ENST00000384242 N/A N/A N/A N/A 29.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000211990 ENST00000390701 0.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.751±0.00
ENSG00000259515 ENST00000560931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.874±0.00 24.619±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021277 ENSMUST00000021706 3.858±2.12 4.424±2.88 6.707±1.67 5.639±3.44 3.190±0.95 2.403±0.66 2.184±0.38 1.862±0.43 1.155±0.45 2.077±0.39 2.518±0.54 2.322±0.82 3.281±1.15 N/A
ENSMUST00000060274 N/A N/A N/A 2.766±0.00 N/A N/A N/A N/A 0.417±0.00 N/A 0.430±0.10 0.825±0.01 N/A N/A
ENSMUST00000117269 N/A N/A N/A 0.994±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143395 N/A N/A N/A 5.593±0.00 N/A N/A N/A N/A N/A N/A N/A 5.086±0.00 5.562±0.30 0.608±0.00
ENSMUSG00000021278 ENSMUST00000021707 0.080±0.04 0.093±0.04 0.337±0.18 1.489±0.52 0.862±0.47 4.545±2.23 0.028±0.00 103.444±19.66 0.389±0.32 0.138±0.09 0.039±0.01 0.413±0.24 42.430±51.86 1.852±1.24
ENSMUSG00000083193 ENSMUST00000121608 N/A N/A 0.022±0.00 0.137±0.06 0.095±0.05 N/A N/A N/A 0.017±0.00 N/A 0.073±0.03 0.045±0.00 0.067±0.01 2.584±0.37

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