C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myelin expression factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561351 MYEF2-002 ENSG00000104177 9606 - 15:48152307-48178316 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0001 CGP 15:47184101-48142672
CIL_0004QO CIL_0004QO_0002 CGP 15:48120972-48178517
CIL_0004NI CIL_0004NI_0001 CGP 15:48134631-48203756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0014902 IEP myotube differentiation
GO:0030182 IEP neuron differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149911 Myef2-009 retained_intron Mus_musculus 0 935
ENSMUST00000137091 Myef2-004 protein_coding Mus_musculus 0 933
ENSMUST00000142718 Myef2-005 protein_coding Mus_musculus 0 933
ENSMUST00000152367 Myef2-001 protein_coding Mus_musculus 0 933
ENSMUST00000061419 Gm9833-201 protein_coding Mus_musculus 0 933
ENSMUST00000067780 Myef2-201 protein_coding Mus_musculus 0 931
ENSMUST00000089825 Myef2-002 protein_coding Mus_musculus 0 931
ENSMUST00000147105 Myef2-003 protein_coding Mus_musculus 0 931
ENSMUST00000110501 Myef2-008 nonsense_mediated_decay Mus_musculus 0 931

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