C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561924 CBFB-007 ENSG00000067955 9606 + 16:67029116-67098811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000561924
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000561924 6.892±0.00 6.960±0.00 12.158±0.00 5.304±0.00 4.554±0.00 2.179±0.00 4.639±0.00 3.511±0.00 10.440±0.53 11.317±0.00 4.814±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0005T3 CIL_0005T3_0001 CGP 16:66988589-67101058
CIL_0005T2 CIL_0005T2_0001 CGP 16:67029116-67148539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IEA transcription coactivator activity
GO:0005634 IEA nucleus
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109392 Cbfb-003 protein_coding Mus_musculus 0 804
ENSMUST00000052209 Cbfb-001 protein_coding Mus_musculus 0 647
ENSMUST00000109395 Cbfb-002 protein_coding Mus_musculus 0 507
ENSMUST00000186070 Cbfb-006 retained_intron Mus_musculus 0 324
ENSMUST00000109394 Cbfb-004 protein_coding Mus_musculus 0 313
ENSMUST00000190915 Cbfb-007 processed_transcript Mus_musculus 0 311
ENSMUST00000187323 Cbfb-008 processed_transcript Mus_musculus 0 285

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