C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562636 RP11-467J12.1-001 ENSG00000260326 9606 + 16:52934813-52935635 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryTestisENST00000562636
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Testis
ENST00000562636 0.063±0.00 0.022±0.00 0.074±0.00 0.095±0.00 0.360±0.25 0.138±0.00 0.215±0.00 0.019±0.00 0.039±0.01 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0008U8 CIL_0008U8_0001 VISTA 16:52406202-53010959
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150
CIL_0009C3 CIL_0009C3_0001 VISTA 16:52653279-53264699

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125172 Phb-001 protein_coding Mus_musculus 0 893
ENSMUST00000146631 Gm7666-001 transcribed_processed_pseudogene Mus_musculus 0 887
ENSMUST00000117522 1700071K01Rik-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000117258 Gm7781-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000036374 Phb-002 protein_coding Mus_musculus 0 684
ENSMUST00000119287 Gm9673-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000120392 Gm4773-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000122108 Gm7841-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000118371 Gm15078-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000123001 Phb-005 processed_transcript Mus_musculus 0 357
ENSMUST00000123071 Phb-004 processed_transcript Mus_musculus 0 287
ENSMUST00000162154 Fyb-006 processed_transcript Mus_musculus 0 268

Loading