C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U6 snRNA biogenesis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566082 USB1-005 ENSG00000103005 9606 + 16:58015113-58021617 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryTestisENST00000566082
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Testis
ENST00000566082 2.528±0.00 0.126±0.00 0.821±0.65 0.191±0.00 0.107±0.00 0.115±0.00 0.158±0.00 0.459±0.00 2.094±0.00 4.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_00052C CIL_00052C_0002 CGP 16:57994668-58021618
CIL_0004RY CIL_0004RY_0001 CGP 16:57999546-58046901

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034245 Usb1-001 protein_coding Mus_musculus 0 346
ENSMUST00000145060 Usb1-003 retained_intron Mus_musculus 9e-34 150

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