C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, beta type, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571309 PSMB6-003 ENSG00000142507 9606 + 17:4796204-4798329 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleTestisENST00000571309
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Testis
ENST00000571309 11.116±0.00 20.719±0.00 19.361±0.00 18.776±0.00 17.074±0.00 38.710±0.00 32.340±0.00 18.762±0.00 25.361±0.00 19.814±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CM CIL_0003CM_0001 CGP 17:4788959-4798503
CIL_0001RF CIL_0001RF_0001 CGP 17:4796144-4823434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005839 IEA proteasome core complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018430 Psmb6-001 protein_coding Mus_musculus 0 418
ENSMUST00000187074 RP24-468G12.2-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000117520 Psmb6-ps-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000128870 Psmb6-002 retained_intron Mus_musculus 0 287
ENSMUST00000148535 Psmb6-003 retained_intron Mus_musculus 6.99949e-42 174
ENSMUST00000145503 Psmb6-004 retained_intron Mus_musculus 3.00004e-41 172

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