C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577940 DDX42-006 ENSG00000198231 9606 + 17:63792529-63813290 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverLungMuscleOvaryENST00000577940
Transcript ID Bladder Breast Colon Liver Lung Muscle Ovary
ENST00000577940 13.620±0.00 11.130±0.00 11.226±0.00 11.916±0.00 17.813±0.00 7.675±0.00 16.533±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021046 Ddx42-001 protein_coding Mus_musculus 0 1890
ENSMUST00000152860 Ddx42-002 processed_transcript Mus_musculus 0 350
ENSDART00000127297 ddx42-001 protein_coding Danio_rerio 0 195
ENSDART00000076209 ddx42-201 protein_coding Danio_rerio 3e-34 150
ENSDART00000151504 ddx42-002 retained_intron Danio_rerio 0.00000001 66

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