C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582717 GGA3-005 ENSG00000125447 9606 - 17:75238238-75262363 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverOvaryTestisENST00000582717
Transcript ID Kidney Liver Ovary Testis
ENST00000582717 1.280±0.00 1.704±0.00 2.464±0.00 13.775±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363
CIL_0007I1 CIL_0007I1_0001 CGP 17:75236599-75266373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005802 IEA:IDA trans-Golgi network
GO:0006886 IEA:NAS intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030306 IEA:IDA ADP-ribosylation factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019135 Gga3-001 protein_coding Mus_musculus 0 1945
ENSMUST00000156173 Gga3-003 nonsense_mediated_decay Mus_musculus 0 1399
ENSMUST00000106508 Gga3-002 protein_coding Mus_musculus 0 747
ENSMUST00000128437 Gga3-006 processed_transcript Mus_musculus 0 606
ENSMUST00000123485 Gga3-010 processed_transcript Mus_musculus 0 577
ENSMUST00000041587 Gga1-201 protein_coding Mus_musculus 0 241
ENSMUST00000154832 Gga3-011 processed_transcript Mus_musculus 9.99995e-41 172

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