C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074875 Bcas3-201 ENSMUSG00000059439 10090 + 11:85353212-85825350 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000074875
Transcript ID Brain
ENSMUST00000074875 4.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0003 CGP 11:85311244-85826058
CIL_000703 CIL_000703_0002 CGP 11:85353167-85841948

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005881 IDA cytoplasmic microtubule
GO:0007030 IMP Golgi organization
GO:0008134 IEA transcription factor binding
GO:0010595 IDA positive regulation of endothelial cell migration
GO:0010698 IEA acetyltransferase activator activity
GO:0031023 IMP microtubule organizing center organization
GO:0031252 IDA cell leading edge
GO:0032864 IDA activation of Cdc42 GTPase activity
GO:0034259 IMP negative regulation of Rho GTPase activity
GO:0035035 IEA histone acetyltransferase binding
GO:0035148 IMP tube formation
GO:0035257 IEA nuclear hormone receptor binding
GO:0035327 ISS transcriptionally active chromatin
GO:0042393 IEA histone binding
GO:0043085 ISS positive regulation of catalytic activity
GO:0043089 IMP positive regulation of Cdc42 GTPase activity
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048487 ISS beta-tubulin binding
GO:0051491 IMP positive regulation of filopodium assembly
GO:0051895 IDA negative regulation of focal adhesion assembly
GO:0071391 ISS cellular response to estrogen stimulus
GO:0071944 IDA cell periphery
GO:0090316 IDA positive regulation of intracellular protein transport
GO:2000114 IMP regulation of establishment of cell polarity
GO:2000251 IDA positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000390652 BCAS3-001 protein_coding Homo_sapiens 0 3496
ENST00000407086 BCAS3-002 protein_coding Homo_sapiens 0 2087
ENST00000408905 BCAS3-013 protein_coding Homo_sapiens 0 2060
ENST00000585744 BCAS3-005 protein_coding Homo_sapiens 0 2671
ENST00000585812 BCAS3-008 processed_transcript Homo_sapiens 0 239
ENST00000585979 BCAS3-028 processed_transcript Homo_sapiens 0 902
ENST00000586041 BCAS3-025 processed_transcript Homo_sapiens 0 649
ENST00000586241 BCAS3-018 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000586484 BCAS3-023 protein_coding Homo_sapiens 0 765
ENST00000586705 BCAS3-022 protein_coding Homo_sapiens 0 610
ENST00000587002 BCAS3-032 protein_coding Homo_sapiens 2e-32 143
ENST00000587294 BCAS3-031 processed_transcript Homo_sapiens 0 243
ENST00000588168 BCAS3-014 protein_coding Homo_sapiens 0 473
ENST00000588462 BCAS3-012 protein_coding Homo_sapiens 0 3245
ENST00000588532 BCAS3-017 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000588569 BCAS3-033 processed_transcript Homo_sapiens 0 241
ENST00000588720 BCAS3-010 retained_intron Homo_sapiens 0 231
ENST00000588874 BCAS3-006 protein_coding Homo_sapiens 0 1339
ENST00000589222 BCAS3-004 protein_coding Homo_sapiens 0 2087
ENST00000589916 BCAS3-020 retained_intron Homo_sapiens 0 597
ENST00000590128 BCAS3-024 protein_coding Homo_sapiens 0 743
ENST00000590352 BCAS3-026 processed_transcript Homo_sapiens 0 383
ENST00000591147 BCAS3-015 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000591371 BCAS3-019 processed_transcript Homo_sapiens 0 399
ENST00000592393 BCAS3-021 processed_transcript Homo_sapiens 0 597
ENST00000592702 BCAS3-009 processed_transcript Homo_sapiens 0 464
ENST00000592827 BCAS3-029 processed_transcript Homo_sapiens 0 462
ENST00000592848 BCAS3-016 nonsense_mediated_decay Homo_sapiens 0 693
ENST00000593004 BCAS3-034 processed_transcript Homo_sapiens 0 401
ENST00000613443 BCAS3-201 protein_coding Homo_sapiens 0 3038
ENST00000614888 BCAS3-202 protein_coding Homo_sapiens 0 2087

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