C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154396 Bcas3-004 ENSMUSG00000059439 10090 + 11:85466159-85826058 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000154396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000154396 6.195±0.32 10.131±2.19 3.258±0.38 4.737±0.80 5.999±1.01 4.053±0.79 2.365±0.54 7.252±0.59 2.746±0.72 5.708±0.25 2.446±0.37 6.533±1.84 1.977±0.78 3.421±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0003 CGP 11:85311244-85826058
CIL_000703 CIL_000703_0002 CGP 11:85353167-85841948

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000390652 BCAS3-001 protein_coding Homo_sapiens 0 1378
ENST00000407086 BCAS3-002 protein_coding Homo_sapiens 0 2638
ENST00000408905 BCAS3-013 protein_coding Homo_sapiens 0 2375
ENST00000585744 BCAS3-005 protein_coding Homo_sapiens 0 1339
ENST00000585812 BCAS3-008 processed_transcript Homo_sapiens 0 267
ENST00000585979 BCAS3-028 processed_transcript Homo_sapiens 0 900
ENST00000586041 BCAS3-025 processed_transcript Homo_sapiens 0 649
ENST00000586484 BCAS3-023 protein_coding Homo_sapiens 0 765
ENST00000586705 BCAS3-022 protein_coding Homo_sapiens 0 610
ENST00000587002 BCAS3-032 protein_coding Homo_sapiens 2e-32 143
ENST00000587294 BCAS3-031 processed_transcript Homo_sapiens 0 267
ENST00000588462 BCAS3-012 protein_coding Homo_sapiens 0 1262
ENST00000588569 BCAS3-033 processed_transcript Homo_sapiens 0 268
ENST00000588720 BCAS3-010 retained_intron Homo_sapiens 0 270
ENST00000588874 BCAS3-006 protein_coding Homo_sapiens 0 2638
ENST00000589222 BCAS3-004 protein_coding Homo_sapiens 0 2375
ENST00000590128 BCAS3-024 protein_coding Homo_sapiens 0 743
ENST00000590352 BCAS3-026 processed_transcript Homo_sapiens 0 383
ENST00000592702 BCAS3-009 processed_transcript Homo_sapiens 0 503
ENST00000592827 BCAS3-029 processed_transcript Homo_sapiens 0 460
ENST00000613443 BCAS3-201 protein_coding Homo_sapiens 0 1262
ENST00000614888 BCAS3-202 protein_coding Homo_sapiens 0 2141

Loading