C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585753 CTC-448F2.3-001 ENSG00000267258 9606 + 19:29921182-29921653 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000585753
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000585753 0.031±0.00 0.097±0.00 0.102±0.00 0.033±0.00 0.030±0.00 0.029±0.00 0.162±0.00 0.062±0.00 0.028±0.00 0.064±0.00 0.120±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TZ CIL_0008TZ_0001 VISTA 19:29588658-30189738
CIL_000835 CIL_000835_0001 VISTA 19:29703707-30304596
CIL_000834 CIL_000834_0001 VISTA 19:29775043-30376109
CIL_00090S CIL_00090S_0001 VISTA 19:29783480-30384453
CIL_0007OB CIL_0007OB_0001 UCNEbase 19:29888853-30910612

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 556
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 534
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 532
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 529
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 529
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 499
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 496
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 488
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000120462 Gm6062-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 9.94922e-44 180

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