C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586224 TRMT1-008 ENSG00000104907 9606 - 19:13115464-13116748 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryENST00000586224
Transcript ID Liver Muscle Ovary
ENST00000586224 1.467±0.00 4.324±0.00 2.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0030488 IEA tRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128022 Trmt1-014 processed_transcript Mus_musculus 1e-39 167
ENSMUST00000177286 Trmt1-027 processed_transcript Mus_musculus 1e-39 167
ENSMUST00000125370 Trmt1-018 protein_coding Mus_musculus 1e-39 167
ENSMUST00000077990 Trmt1-006 processed_transcript Mus_musculus 1e-39 167
ENSMUST00000109768 Trmt1-003 protein_coding Mus_musculus 1e-39 167
ENSMUST00000177084 Trmt1-007 protein_coding Mus_musculus 1e-39 167
ENSMUST00000109767 Trmt1-002 protein_coding Mus_musculus 1e-39 167
ENSMUST00000001974 Trmt1-001 protein_coding Mus_musculus 1e-39 167
ENSMUST00000177531 Trmt1-019 protein_coding Mus_musculus 1e-39 167

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